LOCUS BAC79990.1 366 aa PRT PLN 16-FEB-2008 DEFINITION Oryza sativa Japonica Group putative (S)-2-hydroxy-acid oxidase protein. ACCESSION AP004988-7 PROTEIN_ID BAC79990.1 SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 168173) AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K. TITLE Direct Submission JOURNAL Submitted (27-MAR-2002) to the DDBJ/EMBL/GenBank databases. Contact:Takuji Sasaki National Institute of Agrobiological Sciences, Rice Genome Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://rgp.dna.affrc.go.jp/ REFERENCE 2 AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K. TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 7, BAC clone:B1056G08 JOURNAL Published Only in Database(2002) COMMENT Genes were predicted from the integrated results of the following: GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH (http://www.softberry.com/), GeneMark.hmm (http://opal.biology.gatech.edu/GeneMark/), GlimmerM (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4 (http://globin.cse.psu.edu/html/docs/sim4.html), gap2 (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The genomic sequence was searched against NCBI NonRedundant Protein database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA sequence database at RGP or DDBJ. Protein homologies of the coding regions were searched against NCBI NonRedundant Protein database with BLASTP. ESTs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. and RGP clone ID. Full-length cDNAs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. A gene with identity or significant homology to a protein is classified based on the protein name to indicate the homology level such as same name, 'putative-' and '-like protein'. A gene without significant homology to any protein but with full-length cDNA or EST homology (covering almost the entire length of partial sequence) is classified as an 'unknown' protein. A gene predicted by two or more gene prediction programs is classified as a 'hypothetical' protein according to IRGSP standard. A gene predicted by a single gene prediction program is also classified as a probable 'hypothetical' protein and is included as a miscellaneous feature of the sequence. The orientation of the sequence is from M13rev to -21M13 of the BAC clone. This sequence of B1056G08 clone has an overlap with P0616D06(DDBJ: AP005198) at 5' end and an overlap with P0552F09 clone(DDBJ: AP004308) at 3' end and an overlap with P0560B08 clone(DDBJ: AP004309) at 3' end. Detailed information on overlap and assembly quality together with annotation of this entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html FEATURES Qualifiers source /chromosome="7" /clone="B1056G08" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="genomic DNA" /organism="Oryza sativa Japonica Group" protein /gene="B1056G08.112" /note="contains EST(s): C72544(E1811),AU093995(E1811)" /note="contains full-length cDNA(s): AK071738" intron_pos 49:2 (1/9) intron_pos 91:1 (2/9) intron_pos 107:0 (3/9) intron_pos 133:0 (4/9) intron_pos 174:2 (5/9) intron_pos 195:0 (6/9) intron_pos 216:0 (7/9) intron_pos 239:1 (8/9) intron_pos 308:0 (9/9) BEGIN 1 MEDNLPVNVR EYQELAKKAL PKMAYDYING GAEDEHTLRE NIAAYTRIIL RPRVLVDVSK 61 IDMSTTLLGY TMRSPIIVAP TGGHKLAHPE GEKATARAAA SCNAIMVLSF SSSCKIEDVA 121 SSCNAIRFYQ LYVYKNRNVS ATLVRRAESC GFKALLLTVD TPMLGRREAD IRNKMVFPRS 181 GNLEGLMTTD DHDTTNGSQL ERFARATLDP SLSWKDIEWL KSITSMPIFL KGIVTAEDAR 241 RAVEAGVAGV IVSNHGARQL DYAPATIAAL EEVVRAVAGA VPVLVDGGIR RGTDVFKALA 301 LGARAVMVGR PVFFGLAARG EAGARHVIEM LNGELEVAMA LCGCRSVGEI TRSHVMTEGD 361 RIRSLL //