LOCUS BAC79989.1 507 aa PRT PLN 16-FEB-2008 DEFINITION Oryza sativa Japonica Group putative 3-oxoacyl-[acyl-carrier- protein] synthase protein. ACCESSION AP004988-5 PROTEIN_ID BAC79989.1 SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 168173) AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K. TITLE Direct Submission JOURNAL Submitted (27-MAR-2002) to the DDBJ/EMBL/GenBank databases. Contact:Takuji Sasaki National Institute of Agrobiological Sciences, Rice Genome Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://rgp.dna.affrc.go.jp/ REFERENCE 2 AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K. TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 7, BAC clone:B1056G08 JOURNAL Published Only in Database(2002) COMMENT Genes were predicted from the integrated results of the following: GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH (http://www.softberry.com/), GeneMark.hmm (http://opal.biology.gatech.edu/GeneMark/), GlimmerM (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4 (http://globin.cse.psu.edu/html/docs/sim4.html), gap2 (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The genomic sequence was searched against NCBI NonRedundant Protein database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA sequence database at RGP or DDBJ. Protein homologies of the coding regions were searched against NCBI NonRedundant Protein database with BLASTP. ESTs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. and RGP clone ID. Full-length cDNAs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. A gene with identity or significant homology to a protein is classified based on the protein name to indicate the homology level such as same name, 'putative-' and '-like protein'. A gene without significant homology to any protein but with full-length cDNA or EST homology (covering almost the entire length of partial sequence) is classified as an 'unknown' protein. A gene predicted by two or more gene prediction programs is classified as a 'hypothetical' protein according to IRGSP standard. A gene predicted by a single gene prediction program is also classified as a probable 'hypothetical' protein and is included as a miscellaneous feature of the sequence. The orientation of the sequence is from M13rev to -21M13 of the BAC clone. This sequence of B1056G08 clone has an overlap with P0616D06(DDBJ: AP005198) at 5' end and an overlap with P0552F09 clone(DDBJ: AP004308) at 3' end and an overlap with P0560B08 clone(DDBJ: AP004309) at 3' end. Detailed information on overlap and assembly quality together with annotation of this entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html FEATURES Qualifiers source /chromosome="7" /clone="B1056G08" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="genomic DNA" /organism="Oryza sativa Japonica Group" protein /gene="B1056G08.109" /note="contains full-length cDNA(s): AK067275" intron_pos 73:1 (1/12) intron_pos 141:0 (2/12) intron_pos 209:0 (3/12) intron_pos 246:0 (4/12) intron_pos 278:0 (5/12) intron_pos 293:1 (6/12) intron_pos 320:0 (7/12) intron_pos 343:0 (8/12) intron_pos 371:1 (9/12) intron_pos 423:0 (10/12) intron_pos 450:0 (11/12) intron_pos 470:0 (12/12) BEGIN 1 MAAVAVPPLS AWLVAARSST QAECGGADEH HHHHHQQQHQ CCVGGGSSTV MFGPRRRRFL 61 GGGARRRGAA RSGMAMAVAL QPERRTVEKK PDVKQRRVVI TGMGVVTPLG HDPDVFYNNL 121 LDGVSGISEI ERFDCSTFPT RIAGEIKSFS TDGWVAPKLA RRMDKFMLYL ITAGKKALEH 181 GGLTEELRNE LDKTRCGVLI GSAMGGMKVF NDAIEALRVS YKKMNPFCVP FATTNMGSAI 241 LAMDLGWMGP NYSISTACAT SNFCILNAAN HIRRGEADVM LCGGSDAPLI PIGLGGFVAC 301 RALSQRNSDP TKASRPWDVD RDGFVMGEGA GVLVLEELEH AKQRGAKIYA EFLGGSFTCD 361 AYHMTEPHPE GRGIILCIEK ALADSGVARE EINYVNAHAT STQSGDLKEY EAIVRCFGQN 421 PQLRVNSTKS MTGHLIGAAG GIEAVAAIQA IRTGWVHPNL NLENPEKIVD VGVLVGSQKE 481 RCKVNVALSN SFGFGGHNSS ILFAPFK //