LOCUS BAC16030.1 720 aa PRT PLN 16-FEB-2008 DEFINITION Oryza sativa Japonica Group putative leucine-rich repeat transmembrane protein kinase 2 protein. ACCESSION AP004308-17 PROTEIN_ID BAC16030.1 SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 134659) AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K. TITLE Direct Submission JOURNAL Submitted (31-OCT-2001) to the DDBJ/EMBL/GenBank databases. Contact:Takuji Sasaki National Institute of Agrobiological Sciences, Rice Genome Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://rgp.dna.affrc.go.jp/ REFERENCE 2 AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K. TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 7, PAC clone:P0552F09 JOURNAL Published Only in Database(2001) COMMENT Genes were predicted from the integrated results of the following: GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH (http://www.softberry.com/), GeneMark.hmm (http://opal.biology.gatech.edu/GeneMark/), GlimmerM (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4 (http://globin.cse.psu.edu/html/docs/sim4.html), gap2 (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The genomic sequence was searched against NCBI NonRedundant Protein database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA sequence database at RGP or DDBJ. Protein homologies of the coding regions were searched against NCBI NonRedundant Protein database with BLASTP. ESTs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. and RGP clone ID. Full-length cDNAs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. A gene with identity or significant homology to a protein is classified based on the protein name to indicate the homology level such as same name, 'putative-' and '-like protein'. A gene without significant homology to any protein but with full-length cDNA or EST homology (covering almost the entire length of partial sequence) is classified as an 'unknown' protein. A gene predicted by two or more gene prediction programs is classified as a 'hypothetical' protein according to IRGSP standard. A gene predicted by a single gene prediction program is also classified as a probable 'hypothetical' protein and is included as a miscellaneous feature of the sequence. The orientation of the sequence is from SP6 to T7 of the PAC clone. This sequence of P0552F09 clone has an overlap with B1056G08 (DDBJ: AP004988) at 5' end and with P0560B08 (DDBJ: AP004309) at 3' end. Detailed information on overlap and assembly quality together with annotation of this entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html FEATURES Qualifiers source /chromosome="7" /clone="P0552F09" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="genomic DNA" /organism="Oryza sativa Japonica Group" protein /gene="P0552F09.128" intron_pos 28:1 (1/15) intron_pos 72:2 (2/15) intron_pos 96:2 (3/15) intron_pos 119:2 (4/15) intron_pos 143:2 (5/15) intron_pos 166:2 (6/15) intron_pos 190:2 (7/15) intron_pos 212:2 (8/15) intron_pos 234:2 (9/15) intron_pos 346:1 (10/15) intron_pos 441:0 (11/15) intron_pos 531:2 (12/15) intron_pos 577:0 (13/15) intron_pos 620:2 (14/15) intron_pos 673:0 (15/15) BEGIN 1 MAVATGAVML FLAATLSGVS ANTDSDDVNA LNVLYTSMNS PSQLTNWVSQ NGDPCGQSWL 61 GITCSGSRVT AIKLSGMGIN GTLGYNMNLL TSLVELDTSK NNLGGSDIPY NLPPNLERLN 121 LAENNFTGSI PYSISQMIAL RILNLGHNHL ATTNDMFNQL TNLTTLDLSY NTLSGNIPQS 181 FNSLTNLRKL NLQNNGFNGT IDVLADLPLT DLNVANNQFT GWIPDKLKKI KNLQTNGNSF 241 GSGPSPPPPP YQSPPYKSPP YKSPQSRQPA PPTTTVNNNP SDDGRKHSKL SGGAIAGIVV 301 CLVVVGAIVA FFVIKKKYWS LPRGGDPEQK EPLSPIVSGF KDSLKQMKSI KIISTIGKEE 361 LQKTVSMNLK PPTRIDLHKS IDENDVTSKS FTRKISFSSI RTPAYTVADL QVATGSFCAD 421 NLIGEGLFGR VYKAKFNDHK VLAVKKINFS AFPGHPSDLF IELVANISRL NHPSLSELVG 481 YCSEHGQCLL AYEFYRNGSL KDLLHLVDDQ SQPLSWNSRV KIALGSARAL EYLHETCSPS 541 VIHKNFKSSN IFLDNELNPH LSDSGFADLI PNRESQVSDE DSGYRAPEVT MSGQYSVKSD 601 VYSFGVVMLE LLTGRKPFDR SRPRSEQSLV GWATPQLHDI DALDQMVDPA LQGLYPSKSL 661 SRFADAIALC VQSEPEFRPP MSEVVQLLVR LVQRANMTRM CGADGHSWRR DGESRDQEPW //