LOCUS BAC16012.1 816 aa PRT PLN 16-FEB-2008 DEFINITION Oryza sativa Japonica Group sucrose synthase 3 (Sucrose- UDP glucosyltransferase 3) protein. ACCESSION AP004308-1 PROTEIN_ID BAC16012.1 SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 134659) AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K. TITLE Direct Submission JOURNAL Submitted (31-OCT-2001) to the DDBJ/EMBL/GenBank databases. Contact:Takuji Sasaki National Institute of Agrobiological Sciences, Rice Genome Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://rgp.dna.affrc.go.jp/ REFERENCE 2 AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K. TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 7, PAC clone:P0552F09 JOURNAL Published Only in Database(2001) COMMENT Genes were predicted from the integrated results of the following: GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH (http://www.softberry.com/), GeneMark.hmm (http://opal.biology.gatech.edu/GeneMark/), GlimmerM (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4 (http://globin.cse.psu.edu/html/docs/sim4.html), gap2 (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The genomic sequence was searched against NCBI NonRedundant Protein database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA sequence database at RGP or DDBJ. Protein homologies of the coding regions were searched against NCBI NonRedundant Protein database with BLASTP. ESTs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. and RGP clone ID. Full-length cDNAs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. A gene with identity or significant homology to a protein is classified based on the protein name to indicate the homology level such as same name, 'putative-' and '-like protein'. A gene without significant homology to any protein but with full-length cDNA or EST homology (covering almost the entire length of partial sequence) is classified as an 'unknown' protein. A gene predicted by two or more gene prediction programs is classified as a 'hypothetical' protein according to IRGSP standard. A gene predicted by a single gene prediction program is also classified as a probable 'hypothetical' protein and is included as a miscellaneous feature of the sequence. The orientation of the sequence is from SP6 to T7 of the PAC clone. This sequence of P0552F09 clone has an overlap with B1056G08 (DDBJ: AP004988) at 5' end and with P0560B08 (DDBJ: AP004309) at 3' end. Detailed information on overlap and assembly quality together with annotation of this entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html FEATURES Qualifiers source /chromosome="7" /clone="P0552F09" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="genomic DNA" /organism="Oryza sativa Japonica Group" protein /gene="P0552F09.101" /note="contains EST(s): D22428(C11107),C74923(E60908),AU166639(C30501),C19527 (E10554),C99265(E10554)" /note="contains full-length cDNA(s): AK100306" intron_pos 37:2 (1/14) intron_pos 81:0 (2/14) intron_pos 131:2 (3/14) intron_pos 196:0 (4/14) intron_pos 235:2 (5/14) intron_pos 308:0 (6/14) intron_pos 340:0 (7/14) intron_pos 398:0 (8/14) intron_pos 437:0 (9/14) intron_pos 492:2 (10/14) intron_pos 567:2 (11/14) intron_pos 674:0 (12/14) intron_pos 755:2 (13/14) intron_pos 802:0 (14/14) BEGIN 1 MGETTGERAL TRLHSMRERI GDSLSAHTNE LVAVFSRLVN QGKGMLQPHQ IIAEYNAAIP 61 EGEREKLKDS ALEDVLRGAQ EAIVIPPWIA LAIRPRPGVW EYLRINVSQL GVEELSVPEY 121 LQFKEQLVDG STQNNFVLEL DFEPFNASFP RPSLSKSIGN GVQFLNRHLS SKLFHDKESM 181 YPLLNFLRAH NYKGMTMMLN DRIRSLDALQ GALRKAEKHL AGITADTPYS EFHHRFQELG 241 LEKGWGDCAQ RVRETIHLLL DLLEAPEPSA LEKFLGTIPM VFNVVILSPH GYFAQANVLG 301 YPDTGGQVVY ILDQVRAMEN EMLLRIKQQG LNITPRILIV TRLLPDAHGT TCGQRLEKVL 361 GTEHTHILRV PFRTENGTVR KWISRFEVWP YLETYTDDVA HEISGELQAT PDLIIGNYSD 421 GNLVACLLAH KLGVTHCTIA HALEKTKYPN SDLYWKKFED HYHFSCQFTA DLIAMNHADF 481 IITSTFQEIA GNKETVGQYE SHMAFTMPGL YRVVHGIDVF DPKFNIVSPG ADMSIYFPFT 541 ESQKRLTSLH LEIEELLFSD VENTEHKFVL KDKKKPIIFS MARLDHVKNL TGLVELYGRN 601 PRLQELVNLV VVCGDHGKES KDKEEQAEFK KMFNLIEQYN LNGHIRWISA QMNRVRNGEL 661 YRYICDMRGA FVQPALYEAF GLTVIEAMTC GLPTFATAYG GPAEIIVHGV SGYHIDPYQN 721 DKASALLVEF FEKCQEDPNH WIKISQGGLQ RIEEKYTWKL YSERLMTLSG VYGFWKYVTN 781 LDRRETRRYL EMLYALKYRK MATTVPLAIE GEASTK //