LOCUS BAB90552.1 393 aa PRT PLN 16-FEB-2008 DEFINITION Oryza sativa Japonica Group unknown protein protein. ACCESSION AP003794-1 PROTEIN_ID BAB90552.1 SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 150381) AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K. TITLE Direct Submission JOURNAL Submitted (27-JUN-2001) to the DDBJ/EMBL/GenBank databases. Contact:Takuji Sasaki National Institute of Agrobiological Sciences, Rice Genome Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://rgp.dna.affrc.go.jp/ REFERENCE 2 AUTHORS Sasaki,T., Matsumoto,T., Yamamoto,K., Sakata,K., Baba,T., Katayose,Y., Wu,J., Niimura,Y., Cheng,Z., Nagamura,Y., Antonio,B.A., Kanamori,H., Hosokawa,S., Masukawa,M., Arikawa,K., Chiden,Y., Hayashi,M., Okamoto,M., Ando,T., Aoki,H., Arita,K., Hamada,M., Harada,C., Hijishita,S., Honda,M., Ichikawa,Y., Idonuma,A., Iijima,M., Ikeda,M., Ikeno,M., Itoh,S., Itoh,T., Itoh,Y., Itoh,Y., Iwabuchi,A., Kamiya,K., Karasawa,W., Katagiri,S., Kikuta,A., Kobayashi,N., Kono,I., Machita,K., Maehara,T., Mizuno,H., Mizubayashi,T., Mukai,Y., Nagasaki,H., Nakashima,M., Nakama,Y., Nakamichi,Y., Nakamura,M., Namiki,N., Negishi,M., Ohta,I., Ono,N., Saji,S., Sakai,K., Shibata,M., Shimokawa,T., Shomura,A., Song,J., Takazaki,Y., Terasawa,K., Tsuji,K., Waki,K., Yamagata,H., Yamane,H., Yoshiki,S., Yoshihara,R., Yukawa,K., Zhong,H., Iwama,H., Endo,T., Ito,H., Hahn,J.H., Kim,H.I., Eun,M.Y., Yano,M., Jiang,J. and Gojobori,T. TITLE The genome sequence and structure of rice chromosome 1 JOURNAL Nature 420, 312-316 (2002) COMMENT Genes were predicted from the integrated results of the following: GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH (http://www.softberry.com/), GeneMark.hmm (http://opal.biology.gatech.edu/GeneMark/), GlimmerM (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4 (http://globin.cse.psu.edu/html/docs/sim4.html), gap2 (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The genomic sequence was searched against NCBI NonRedundant Protein database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA sequence database at RGP or DDBJ. Protein homologies of the coding regions were searched against NCBI NonRedundant Protein database with BLASTP. ESTs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. and RGP clone ID. Full-length cDNAs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. A gene with identity or significant homology to a protein is classified based on the protein name to indicate the homology level such as same name, 'putative-' and '-like protein'. A gene without significant homology to any protein but with full-length cDNA or EST homology (covering almost the entire length of partial sequence) is classified as an 'unknown' protein. A gene predicted by two or more gene prediction programs is classified as a 'hypothetical' protein according to IRGSP standard. A gene predicted by a single gene prediction program is also classified as a probable 'hypothetical' protein and is included as a miscellaneous feature of the sequence. The orientation of the sequence is from SP6 to T7 of the PAC clone. This sequence of P0489B03 clone has an overlap with P0683F02 (DDBJ: AP003289) clone at 5' end and an overlap with P0679C12 (DDBJ: AP003287) clone at 3' end. Detailed information on overlap and assembly quality together with annotation of this entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html FEATURES Qualifiers source /chromosome="1" /clone="P0489B03" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="genomic DNA" /organism="Oryza sativa Japonica Group" protein /gene="P0489B03.1" /note="contains full-length cDNA(s): AK107493" /note="similar to Oryza sativa chromosome 4, OSJNBb0002J11.10" BEGIN 1 MKRPLRRPFA VLLFVVLCAA ASFPSVLRRS VGPAPVLAPL PPLDPARLNA TLLRLAAADP 61 SEAPLRRDVD DLLEGRLPAS SARARAWRLR GDRLHLHLRH HQFPVYRRGH HPDHDHDPLL 121 HPLPRQELHL DPSLRRALRS WHRLRRHDPG VLRNLPSLLS LPGRIPSCAV VGNSGILLGA 181 SHGALIDSHA AVFRLNNARI SGFAANVGAK TNLSFINSNV LHLCARRPNC FCHPYGDGVP 241 ILLYICQAAH FLDVASCNAS SRSLHAASIS VTDPRLDVLC ARIVKYYSLR RFVAETGRAA 301 EEWSSTRDAA MFHYSSGMQA IMVAVGVCDR VSVFGFGKAA DAKHHYHSNQ KAELDLHDYK 361 AEYAFYRDLA DRPEVVPFLN DAGIAVPPVV FYH //