LOCUS BAA80373.2 1215 aa PRT BCT 07-OCT-2016
DEFINITION Aeropyrum pernix K1 reverse gyrase protein.
ACCESSION BA000002-910
PROTEIN_ID BAA80373.2
SOURCE Aeropyrum pernix K1
ORGANISM Aeropyrum pernix K1
Archaea; Thermoproteota; Thermoprotei; Desulfurococcales;
Desulfurococcaceae; Aeropyrum.
REFERENCE 1 (bases 1 to 1669696)
AUTHORS Tanaka,T., Hino,Y., Kawarabayasi,Y., Kikuchi,H., Tajima,T.,
Sekigawa,T., Oguchi,A., Yamazaki,S., Tanikawa,S., Fujita,N. and
Harayama,S.
TITLE Direct Submission
JOURNAL Submitted (14-DEC-1998) to the DDBJ/EMBL/GenBank databases.
Contact:Director-General of Department of Biotechnology
National Institute of Technology and Evaluation (NITE), NITE
Genome Analysis Center (NGAC), Department of Biotechnology;
2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066, Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Kawarabayasi,Y., Hino,Y., Horikawa,H., Yamazaki,S., Haikawa,Y.,
Jin-no,K., Takahashi,M., Sekine,M., Baba,S., Ankai,A., Kosugi,H.,
Hosoyama,A., Fukui,S., Nagai,Y., Nishijima,K., Nakazawa,H.,
Takamiya,M., Masuda,S., Funahashi,T., Tanaka,T., Kudoh,Y.,
Yamazaki,J., Kushida,N., Oguchi,A., Aoki,K., Kubota,K.,
Nakamura,Y., Nomura,N., Sako,Y. and Kikuchi,H.
TITLE Complete Genome Sequence of an Aerobic Hyper-thermophilic
Crenarchaeon, Aeropyrum pernix K1.
JOURNAL DNA Res. 6, 83-101 (1999)
REFERENCE 3
AUTHORS Yamazaki,S., Kikuchi,H. and Kawarabayasi,Y.
TITLE Characterization of a Whole Set of tRNA Molecules in an Aerobic
Hyper-thermophilic Crenarchaeon, Aeropyrum pernix K1
JOURNAL DNA Res. 12, 403-416 (2005)
REFERENCE 4
AUTHORS Yamazaki,S., Yamazaki,J., Nishijima,K., Otsuka,R., Mise,M.,
Ishikawa,H., Sasaki,K., Tago,S. and Isono,K.
TITLE Proteome Analysis of an Aerobic Hyperthermophilic Crenarchaeon,
Aeropyrum pernix K1
JOURNAL Mol. Cell Proteomics 5, 811-823 (2006)
COMMENT Kawarabayasi, Y. is at National Institute of Advanced Industrial
Science and Technology (AIST), Tsukuba, Ibaraki 305-8566, Japan.
Tanaka, T., Hino, Y., Kawarabayasi, Y. and Kikuchi, H. are
original submitters.
Tajima, T., Sekigawa, T., Oguchi, A., Yamazaki, S., Tanikawa, S.,
Fujita, N. and Harayama S. submitted a revised version of the
genomic sequence with a single bp insertion and the result of
reannotation.
The genome of A. pernix was completely re-annotated in May 2006.
Single nucleotide was inserted at position 941,216.
Some ORFs were added or modified according to the result of
proteome analysis at NITE (Yamazaki, S. et al., Mol Cell
Proteomics. 5, 811-823 (2006)).
The detailed process of re-annotation is described in
http://www.bio.nite.go.jp/dogan/GeneralFeature?GENOME_ID=ape_G1.
All locus tags of A. pernix were replaced to new identifiers by
the following rules.
1. Prefix 'APE' or 'APES' was replaced by 'APE_'.
2. ORF numbers were inherited except for those with previous locus
tag starting with 'APES'.
3. An alphabetical character like 'a' was added after the ORF
number where new ORF was inserted between existing ORFs, including
those with previous locus tag starting with 'APES'.
4. Version number like '.1' was added where the start position of
existing ORF was changed.
Please visit our web site.
URL:http://www.bio.nite.go.jp/e/
DOGAN ; Database of the Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
The microbial strain and microbial genomic DNA clones used for
the sequencing project are available through the NBRC.
URL:http://www.nbrc.nite.go.jp/e/index.html
FEATURES Qualifiers
source /culture_collection="NBRC:100138"
/db_xref="taxon:272557"
/focus
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 100138"
/organism="Aeropyrum pernix K1"
/strain="K1"
source /db_xref="taxon:1032474"
/mol_type="genomic DNA"
/organism="Aeropyrum pernix ovoid virus 1"
/proviral
source /db_xref="taxon:1032473"
/mol_type="genomic DNA"
/organism="Aeropyrum pernix spindle-shaped virus 1"
/proviral
protein /EC_number="3.6.1.-"
/EC_number="5.99.1.3"
/experiment="proteome analysis"
/gene="rgy"
/locus_tag="APE_1376.1"
/note="includes helicase and topoisomerase"
/old_locus_tag="APE1376"
/transl_table=11
BEGIN
1 MPGGVNAVYM GLCYNCGGNI DEDRLEKGLP CARCLPSPPR RATPLTVYRA LKKAGTLGAY
61 SWEYLSIREV ERFEAYFAAK SGSRLWSAQR SWAKRLVKGD SFAIIAPTGV GKSTLLTVYA
121 AYVAAVKRGR VLYLVPTENL VRQVYAKLDQ VEPGIATAYY SRMPAKARES SLEKIASGGA
181 RLIVATTGFL SRRFDLLHPQ YKFDLAIVDD VDSLLRNSRN VERILLLTGF SEETVEAAHS
241 LVKARLKLYR ALHSGASESI VSRLEQEIAQ LEARLRLSLS EASPGQLVIA SATGRPRGVK
301 HLLFKELLGF EVGGGSDYLR NIVDAYVVDS DPVGRTAEIV SALGDGVIVF VSQRLGKDVA
361 RAIAGRLEGM GVSTALALTG ARRPVEAFAR GEARVLIGMA SRYGVIVRGL DLPERSKYAV
421 FLGAPSAKTH LLEALYSPRR MLAFLSIAQE KGVEWAGEAF RRLSRLLEKV IDTSIVSLAA
481 RGKLEAQGPA GEAAGIISET APRLVDWLVA EARLQGGLLR VGGLVVDARG PIPYLVVPDA
541 PTYIQASGRV SRLYRGVMTR GLSIVVDEAP EYVEALGERL KWTTSSRLRP LSEVDMEKLR
601 REIEESRRGK GRRVRVKTTL LVVESPTKAR TIAWFWGRPG KRRIGRSVIY EASVSDPETG
661 DVHILQITST RGHLTDLTTD SVGSKYGVDE DGGGYRAYYS TIKRCLDCGA QHTSSSPFCP
721 RCGSPRQVDS KSVVEILRKL ASEVDEIVIA TDPDREGEKI AWDVFLAVRP YNPNVRRGRF
781 HEVTPRAVIE ALRSGESVEK SLIEAQKVRR IVDRWIGFHL STHLKLKFSK PWLGAGRVQT
841 PVLGWIVDRY REWQDTRGYL VIFKLSSGGR TSYFTQNRLE VENLKRVEWL EVVDIAGKTE
901 ERNPPPPYTT DEYLYDASRK LGLSAGLAMK IAQDLFESGL ITYHRTDSTR VSPTGVKLAL
961 EYLASRGLEG EAQPRGWGEG GAHEAIRPVR PIDAQDLERA VLSGSIRIPI RLTRLHIRVY
1021 DMIFRRFIAS QMKPATLDIV EATLQAGETV FNHAGVARVR GGYALVNPPR VEEWLARLSP
1081 GDRIDVEDVL VVKSSLKRLY RAGDIVKMMR EHGIGRPSTY AKAIEQNRRH GYVIESKKMR
1141 YLIPTKTGVS IYDYLSNGFK KLVSVDTTRR LEEALERVEK GVEKPEAVLA SVWRMVDEAV
1201 SLHAATGDVM GQSEA
//