LOCUS AZN95040.1 750 aa PRT BCT 18-DEC-2018
DEFINITION Pseudomonas aeruginosa hybrid sensor histidine kinase/
response regulator protein.
ACCESSION CP032541-5227
PROTEIN_ID AZN95040.1
SOURCE Pseudomonas aeruginosa
ORGANISM Pseudomonas aeruginosa
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 6264451)
AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H.
TITLE Attenuated P. aeruginosa strain PAO1 with in-frame deletion of the
following genes: toxA, plcH, phzM, wapR, and aroA
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 6264451)
AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H.
TITLE Direct Submission
JOURNAL Submitted (25-SEP-2018) BioScience, Los Alamos National Laboratory,
PO Box 1663 M888, Los Alamos, NM 87545, USA
COMMENT Bacteria and source DNA available from Dr. Hongwei Yu.
Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: 20-SEP-2018
Assembly Method :: Bowtie2 v. 2018-09-20
Assembly Name :: PGN5
Genome Representation :: Full
Expected Final Version :: Yes
Reference-guided Assembly :: NC_002516.2
Genome Coverage :: 217.64x
Sequencing Technology :: Illumina NextSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 09/26/2018 16:28:44
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 4.6
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 5,903
CDS (total) :: 5,840
Genes (coding) :: 5,779
CDS (coding) :: 5,779
Genes (RNA) :: 63
rRNAs :: 4 (5S)
complete rRNAs :: 4 (5S)
tRNAs :: 55
ncRNAs :: 4
Pseudo Genes (total) :: 61
Pseudo Genes (ambiguous residues) :: 12 of 61
Pseudo Genes (frameshifted) :: 22 of 61
Pseudo Genes (incomplete) :: 18 of 61
Pseudo Genes (internal stop) :: 13 of 61
Pseudo Genes (multiple problems) :: 4 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Pseudomonas aeruginosa"
/mol_type="genomic DNA"
/strain="PGN5"
/db_xref="taxon:287"
/country="USA: WV, Huntington"
/collection_date="21-Nov-2017"
/collected_by="Progenesis Technologies, LLC"
/identified_by="Progenesis Technologies, LLC"
/note="genotype: PAO1 toxA-, plcH-, phzM-, wapR-, aroA-"
protein /locus_tag="PGN5_26430"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_253669.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MSGHGGVLAR RLLWRVLLFS LCFTVLAGAV QLFFEYRREM REIEARLELI RSGYLASFER
61 SLWDLNQEQL NVQLRGLGDF PDIARVSLQS ADFNLLQGDQ RPRGMLRVER FPLSYQPPGG
121 ERRQLGELEI AIDLAAVYRR LVSGGLASLL WMGSFLCGLA VALSWLFHSL VTRHLWRMSE
181 FAGHIAEGDL QQPLRLDKVD RERDEIDAVA AALEDMRQAL RTDRRRRDAD RDELRRQVER
241 RTASLRRAKD QAEAADRAKS RFLATMSHEI RTPLNGILGM AELLREASLG ERDRQRLRAL
301 ATAGEGLLAI LNEVLHFARL EEAPDVPEAV DFSLRSLLED VLTLLEPRAR ENATRLDLWL
361 DPQVHDGHRG AEQFLRQVLT NLLGNAVKFT EAGEVRVRVE RLARSAGSER LRLSVADDGI
421 GIPEEMRERI FERFTQGGDA VTRRYGGTGL GLAISKRLVE ALGGRIGVES RVGQGSTFWF
481 EIELALASLS GATPPAASVS ALEVLLVEDV ALNREVAQGL LERDGHRVML AEDAGPALAL
541 CRQRRFDLIL LDMHLPGMAG LELCAGIRRQ LDGLNRATPI FAFTASIQPD MVRRYFAAGM
601 QGVLGKPLRM DELRRALGEV GTSVPALAVD AALDRQMLET HRRLLGRHKL AGLLGNLLGS
661 LDEQLPLLAE ALDQADLAEA ANIAHRLSGS CHSMGLVALG AGLGELEREA LGAAGVDPRA
721 WGARLGSLRR DGAEALRRAG FLGEADSAAG
//