LOCUS       AZN94329.1              1399 aa    PRT              BCT 18-DEC-2018
DEFINITION  Pseudomonas aeruginosa DNA-directed RNA polymerase subunit
            beta' protein.
ACCESSION   CP032541-4487
PROTEIN_ID  AZN94329.1
SOURCE      Pseudomonas aeruginosa
  ORGANISM  Pseudomonas aeruginosa
            Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6264451)
  AUTHORS   Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H.
  TITLE     Attenuated P. aeruginosa strain PAO1 with in-frame deletion of the
            following genes: toxA, plcH, phzM, wapR, and aroA
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6264451)
  AUTHORS   Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-SEP-2018) BioScience, Los Alamos National Laboratory,
            PO Box 1663 M888, Los Alamos, NM 87545, USA
COMMENT     Bacteria and source DNA available from Dr. Hongwei Yu.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 20-SEP-2018
            Assembly Method           :: Bowtie2 v. 2018-09-20
            Assembly Name             :: PGN5
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: NC_002516.2
            Genome Coverage           :: 217.64x
            Sequencing Technology     :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 09/26/2018 16:28:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,903
            CDS (total)                       :: 5,840
            Genes (coding)                    :: 5,779
            CDS (coding)                      :: 5,779
            Genes (RNA)                       :: 63
            rRNAs                             :: 4 (5S)
            complete rRNAs                    :: 4 (5S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            Pseudo Genes (ambiguous residues) :: 12 of 61
            Pseudo Genes (frameshifted)       :: 22 of 61
            Pseudo Genes (incomplete)         :: 18 of 61
            Pseudo Genes (internal stop)      :: 13 of 61
            Pseudo Genes (multiple problems)  :: 4 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Pseudomonas aeruginosa"
                     /mol_type="genomic DNA"
                     /strain="PGN5"
                     /db_xref="taxon:287"
                     /country="USA: WV, Huntington"
                     /collection_date="21-Nov-2017"
                     /collected_by="Progenesis Technologies, LLC"
                     /identified_by="Progenesis Technologies, LLC"
                     /note="genotype: PAO1 toxA-, plcH-, phzM-, wapR-, aroA-"
     protein         /gene="rpoC"
                     /locus_tag="PGN5_22635"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MKDLLNLLKN QGQIEEFDAI RIGLASPEMI RSWSFGEVKK PETINYRTFK PERDGLFCAK
       61 IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVALAKVRRE RMGHIELASP VAHIWFLKSL
      121 PSRIGLLLDM TLRDIERVLY FESYVVIDPG MTTLEKGQLL NDEQYFEALE EFGDDFDARM
      181 GAEAVHELLN AIDLEHEIGR LREEIPQTNS ETKIKKLSKR LKLMEAFQGS GNKPEWMVLT
      241 VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
      301 EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT
      361 LRLHQCGLPK KMALELFKPF IFGKLEGRGM ATTIKAAKKM VERELPEVWD VLAEVIREHP
      421 VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
      481 RALMMSTNNI LSPANGEPII VPSQDVVMGL YYMTREAINA KGEGMAFADL QEVDRAYRSG
      541 QASLHARVKV RINEKIKGED GQLTANTRIV DTTVGRALLF QVVPAGLPFD VVNQSMKKKA
      601 ISKLINHCYR VVGLKDTVIF ADQLMYTGFA YSTISGVSIG VNDFVIPDEK ARIINAATDE
      661 VKEIESQYAS GLVTQGEKYN KVIDLWSKAN DEVSKAMMAN LSKEKVVDRE GKEVDQESFN
      721 SMYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR
      781 KGLADTALKT ANSGYLTRRL VDVAQDLVVT EIDCGTEHGL LMSPHIEGGD VVEPLGERVL
      841 GRVIARDVFK PGSDEVIVPA GTLIDEKWVD FLEVMSVDEV VVRSPITCET RHGICAMCYG
      901 RDLARGHRVN IGEAVGVIAA QSIGEPGTQL TMRTFHIGGA ASRTSAADNV QVKNGGTIRL
      961 HNLKHVVRAD GALVAVSRSG ELAVADDFGR ERERYKLPYG AVISVKEGDK VDPGAIVAKW
     1021 DPHTHPIVTE VDGTVAFVGM EEGITVKRQT DELTGLTNIE VMDPKDRPAA GKDIRPAVKL
     1081 IDAAGKDLLL PGTDVPAQYF LPANALVNLT DGAKVSIGDV VARIPQETSK TRDITGGLPR
     1141 VADLFEARRP KEPSILAEIS GTISFGKETK GKRRLVITPN DGSDPYEELI PKWRHLNVFE
     1201 GEQVNRGEVI SDGPSNPHDI LRLLGVSSLA KYIVNEIQDV YRLQGVKIND KHIETILRQM
     1261 LRKVEVSESG DSSFIKGDQV ELTQVLEENE QLGTEDKFPA KYERVLLGIT KASLSTESFI
     1321 SAASFQETTR VLTEAAVTGK RDFLRGLKEN VVVGRLIPAG TGLAYHSERK RQRDLGKPQR
     1381 VSASEAEAAL TEALNSSGN
//