LOCUS AZN93985.1 906 aa PRT BCT 18-DEC-2018 DEFINITION Pseudomonas aeruginosa transcriptional regulator protein. ACCESSION CP032541-4130 PROTEIN_ID AZN93985.1 SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6264451) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Attenuated P. aeruginosa strain PAO1 with in-frame deletion of the following genes: toxA, plcH, phzM, wapR, and aroA JOURNAL Unpublished REFERENCE 2 (bases 1 to 6264451) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Direct Submission JOURNAL Submitted (25-SEP-2018) BioScience, Los Alamos National Laboratory, PO Box 1663 M888, Los Alamos, NM 87545, USA COMMENT Bacteria and source DNA available from Dr. Hongwei Yu. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 20-SEP-2018 Assembly Method :: Bowtie2 v. 2018-09-20 Assembly Name :: PGN5 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 217.64x Sequencing Technology :: Illumina NextSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 09/26/2018 16:28:44 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,903 CDS (total) :: 5,840 Genes (coding) :: 5,779 CDS (coding) :: 5,779 Genes (RNA) :: 63 rRNAs :: 4 (5S) complete rRNAs :: 4 (5S) tRNAs :: 55 ncRNAs :: 4 Pseudo Genes (total) :: 61 Pseudo Genes (ambiguous residues) :: 12 of 61 Pseudo Genes (frameshifted) :: 22 of 61 Pseudo Genes (incomplete) :: 18 of 61 Pseudo Genes (internal stop) :: 13 of 61 Pseudo Genes (multiple problems) :: 4 of 61 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="PGN5" /db_xref="taxon:287" /country="USA: WV, Huntington" /collection_date="21-Nov-2017" /collected_by="Progenesis Technologies, LLC" /identified_by="Progenesis Technologies, LLC" /note="genotype: PAO1 toxA-, plcH-, phzM-, wapR-, aroA-" protein /locus_tag="PGN5_20850" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_252610.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MTDFSRTFSG TPSAVLPTAN RFFRPPLPSA HVARPRLCRR LRDGLDGRLL LIAAPAGFGK 61 SSLAIEFCES LDPRWQSLWL GLSSRESDPG RFLERLLDGL RQYHPTLGEE ALGLLKMRQR 121 HQPFAFETWL DDLLDELAPC LDPQRPLLLV LDDYHLAQGA VLDRCLQFLL NHLPEGLVLL 181 VTSRQRPDWH LARLRLSRQL LELSEQDLRL TAEESGALMA ASGLELDEDA LDALLERSEG 241 WVAGLRLWLL ARGDPEEQVS PGVHGADELI RDYLLEEVIE RQPPEVQAFL AQTARFERFC 301 AELCDTVREA GDSAAILDHL QQHQVFLVPL DENGQWFRYH HLFSDLLLAR PLPDFGPSAG 361 SLHLRACGWF SRHGLLDQAV EQALRAGQPD VAASLVQNLS EEQLLAEQNI ATLLRWKMDL 421 PDSLLASTPR LILLYGWALA LACQLDAAEE LAGQLARFLP APDESAQRDL LAQWQALSGV 481 IARGRGDIDK AEAHCREALQ DLAGERYGTR LQCLSTLSNL AVTRGDFWQA RNYNRDALEF 541 AQRYGNPLFE ALVHYDRARV LQARGEVARA EEEVRQGLER LQHLPAQRRY AVRGRLLLYR 601 GYLRSLALQP DEARKWIKQG IEETRSCRDV SLVIGYCVLA SLEGRLGNYA AAFARLGDVE 661 RLMHAWDIPP IYYLAAITLI KCELWLAQGQ TELAGVWLQR LGGTYGGQAA TPPECSPLLP 721 LHVELLQAGL ERREGRPEEA ARRLDRLARS TRENGALLPA RLALGQLAAL HLEQGREREA 781 LATLQQAMEG AVGGALLPLH ELLVQQPEWL REQLQRFPAC PGAQRMRALL PEPPAEPAGS 841 AGEVLSGREL AVLELIAQGL SNQEISERLF ISLHTVKSHA RHINDKLGVE RRTQAVARAK 901 HMGLLR //