LOCUS AZN93596.1 995 aa PRT BCT 18-DEC-2018 DEFINITION Pseudomonas aeruginosa autotransporter domain-containing protein protein. ACCESSION CP032541-3723 PROTEIN_ID AZN93596.1 SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6264451) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Attenuated P. aeruginosa strain PAO1 with in-frame deletion of the following genes: toxA, plcH, phzM, wapR, and aroA JOURNAL Unpublished REFERENCE 2 (bases 1 to 6264451) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Direct Submission JOURNAL Submitted (25-SEP-2018) BioScience, Los Alamos National Laboratory, PO Box 1663 M888, Los Alamos, NM 87545, USA COMMENT Bacteria and source DNA available from Dr. Hongwei Yu. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 20-SEP-2018 Assembly Method :: Bowtie2 v. 2018-09-20 Assembly Name :: PGN5 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 217.64x Sequencing Technology :: Illumina NextSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 09/26/2018 16:28:44 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,903 CDS (total) :: 5,840 Genes (coding) :: 5,779 CDS (coding) :: 5,779 Genes (RNA) :: 63 rRNAs :: 4 (5S) complete rRNAs :: 4 (5S) tRNAs :: 55 ncRNAs :: 4 Pseudo Genes (total) :: 61 Pseudo Genes (ambiguous residues) :: 12 of 61 Pseudo Genes (frameshifted) :: 22 of 61 Pseudo Genes (incomplete) :: 18 of 61 Pseudo Genes (internal stop) :: 13 of 61 Pseudo Genes (multiple problems) :: 4 of 61 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="PGN5" /db_xref="taxon:287" /country="USA: WV, Huntington" /collection_date="21-Nov-2017" /collected_by="Progenesis Technologies, LLC" /identified_by="Progenesis Technologies, LLC" /note="genotype: PAO1 toxA-, plcH-, phzM-, wapR-, aroA-" protein /locus_tag="PGN5_18810" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_252225.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MTDDHSFRPR PTSLSAALLL GAWIAQPATA AYVEAGRPGD PASWRSAEYQ QDWGLERMRA 61 DQAYAAGIDG QGVKIGEMDS GFDPSHPDTP ASRYQPVTAS GTYVDGTPFS VSGAMNGNND 121 SHGTHVGGTL GASRDGVGMH GVAYAAQVYV ANTNQNDSFL FGPTPDPNYF KAAYQALADA 181 GVRAINNSWG SQPKDVSYET LDGLHAAYAQ HYGRSTWLDA AAGVSRQGVI NVFSAGNSGY 241 ANASVRSALP YFQPDLEGHW LAVSGLDQQN GQRYNRCGIA KYWCITTPGR LINSTMPGGG 301 YANKSGTSMA APHATGALAL VMQRYPYLNN EQALQVLLTT ATQLDGTPTG APTDTVGWGV 361 PDLGRAMHGP GQLLGRFEAN LPAGLRDEWS NPISDSALLQ RQAEDAAEHA AWQRTLKDKG 421 WENGLPAGAS QQERTDYAIG MARDQAAAQR QYQGSLVKAG AGSLVLSGDS TYRGPTLVDG 481 GLLSVDGSLL SAVEVNAGGT LGGSGRIGGL LARSGGTVAA GNSIGTLEVA GDLRFESGST 541 YAVELSESAS DRIVASGKAS IAGGNVTLAM ENSPDLLSQS QVESLVGRRY DILDAAGGID 601 GRFDAVLPNY LFLGGTLDYA ANAIRLDIGR NGTTLASVAQ TPNQAAVAGA VETLGAGNPV 661 YESLLLSENA ATAQRAFQQL SGEIYPALAG LLLNDSRYLR DSVGERLRQT SDGEAGGEAP 721 EGWFKALGSW GKSADGSHGS EGYRHSVGGF LLGVDSQVAS DTRLGLVAGY SNSSLNMDSS 781 LQSSASIDSY HLGAYLGRQL QQWRLSLGAA HAWHRAEVKR DLQYGAVAGK QKAKLDAQSS 841 QLFAEAAYAL GWRSLELEPF AGLAYVHVAS DDFRERGSAA ALEGGDDNLD AAFTTLGLRA 901 KRHFELDAGR RLALSGTLGW RHNLSDTTPQ RHLAFASGSQ PFSVESVALS RDAALLGVDA 961 SLAVNREVSV RLGYNGLLGS REKDHGVGLA VDWRF //