LOCUS AZN93144.1 654 aa PRT BCT 18-DEC-2018 DEFINITION Pseudomonas aeruginosa DUF1302 domain-containing protein protein. ACCESSION CP032541-3248 PROTEIN_ID AZN93144.1 SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6264451) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Attenuated P. aeruginosa strain PAO1 with in-frame deletion of the following genes: toxA, plcH, phzM, wapR, and aroA JOURNAL Unpublished REFERENCE 2 (bases 1 to 6264451) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Direct Submission JOURNAL Submitted (25-SEP-2018) BioScience, Los Alamos National Laboratory, PO Box 1663 M888, Los Alamos, NM 87545, USA COMMENT Bacteria and source DNA available from Dr. Hongwei Yu. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 20-SEP-2018 Assembly Method :: Bowtie2 v. 2018-09-20 Assembly Name :: PGN5 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 217.64x Sequencing Technology :: Illumina NextSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 09/26/2018 16:28:44 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,903 CDS (total) :: 5,840 Genes (coding) :: 5,779 CDS (coding) :: 5,779 Genes (RNA) :: 63 rRNAs :: 4 (5S) complete rRNAs :: 4 (5S) tRNAs :: 55 ncRNAs :: 4 Pseudo Genes (total) :: 61 Pseudo Genes (ambiguous residues) :: 12 of 61 Pseudo Genes (frameshifted) :: 22 of 61 Pseudo Genes (incomplete) :: 18 of 61 Pseudo Genes (internal stop) :: 13 of 61 Pseudo Genes (multiple problems) :: 4 of 61 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="PGN5" /db_xref="taxon:287" /country="USA: WV, Huntington" /collection_date="21-Nov-2017" /collected_by="Progenesis Technologies, LLC" /identified_by="Progenesis Technologies, LLC" /note="genotype: PAO1 toxA-, plcH-, phzM-, wapR-, aroA-" protein /locus_tag="PGN5_16380" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_251772.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MYIPNRQPRL RSAPARAGFA FAGLLPLLGG QAQAVEFSFL DNEVSGSLDT TLSYGTLWRV 61 QGQDKSNNDI NTNDGNRNFD TGLVSEVYKI TSDLEATWRN YGVFIRGTAF YDTQIMDKRN 121 DYYSHNDPSQ PSQSYPHDDR FTSQTRDIAG HKAEILDAYV YGSWDIGNMP LSARFGRQVF 181 NWGEGIFYRG GVNTTNPVDA AKYRLPGSEL KEVLMPVEAL SFNIGLTDNL SMETFYQWNW 241 KETRLDPVGT FFSETDLFAD GGNTGYSDFT GTALDTPVPG FGNVIGLYQA LGNNPLLSGA 301 LKNTGLYANG VTPAYGNVMK VSSIGKDINA RNDGQFGVAF RYIAEELNST EFGFYFVNYH 361 SKEPTLYADI GDYAGADLAA LANTLRPIAG NLAEALANGL VTADVMGNIN ARREFAEDIR 421 MYGFSFNTTV GDASVFGELA YRPNLPIGIA ATNDLIGDLA HGAAEAANGG QINVGGQMVG 481 LGGQIHNYER VEAFNTSLGT IYNFGPSLSF DSLTGVAELA SEHLRGSSLK YTAYDGSTRY 541 YAGRGNSSYV SGGDRGDQVN RNAYGYTLLL SGTWNDVFAG VNVSPYVVYK DDFEGNSYQT 601 GNFIEGRKAY TLGIKATYLN SLEGELQYTE FYGGGQNNNI RDRDNIGLTV KYSF //