LOCUS AZN92517.1 2272 aa PRT BCT 18-DEC-2018
DEFINITION Pseudomonas aeruginosa hypothetical protein protein.
ACCESSION CP032541-2588
PROTEIN_ID AZN92517.1
SOURCE Pseudomonas aeruginosa
ORGANISM Pseudomonas aeruginosa
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 6264451)
AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H.
TITLE Attenuated P. aeruginosa strain PAO1 with in-frame deletion of the
following genes: toxA, plcH, phzM, wapR, and aroA
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 6264451)
AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H.
TITLE Direct Submission
JOURNAL Submitted (25-SEP-2018) BioScience, Los Alamos National Laboratory,
PO Box 1663 M888, Los Alamos, NM 87545, USA
COMMENT Bacteria and source DNA available from Dr. Hongwei Yu.
Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: 20-SEP-2018
Assembly Method :: Bowtie2 v. 2018-09-20
Assembly Name :: PGN5
Genome Representation :: Full
Expected Final Version :: Yes
Reference-guided Assembly :: NC_002516.2
Genome Coverage :: 217.64x
Sequencing Technology :: Illumina NextSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 09/26/2018 16:28:44
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 4.6
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 5,903
CDS (total) :: 5,840
Genes (coding) :: 5,779
CDS (coding) :: 5,779
Genes (RNA) :: 63
rRNAs :: 4 (5S)
complete rRNAs :: 4 (5S)
tRNAs :: 55
ncRNAs :: 4
Pseudo Genes (total) :: 61
Pseudo Genes (ambiguous residues) :: 12 of 61
Pseudo Genes (frameshifted) :: 22 of 61
Pseudo Genes (incomplete) :: 18 of 61
Pseudo Genes (internal stop) :: 13 of 61
Pseudo Genes (multiple problems) :: 4 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Pseudomonas aeruginosa"
/mol_type="genomic DNA"
/strain="PGN5"
/db_xref="taxon:287"
/country="USA: WV, Huntington"
/collection_date="21-Nov-2017"
/collected_by="Progenesis Technologies, LLC"
/identified_by="Progenesis Technologies, LLC"
/note="genotype: PAO1 toxA-, plcH-, phzM-, wapR-, aroA-"
protein /locus_tag="PGN5_13025"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_251152.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 GSLDNSASGT LASQADMSLR LGGGALRNQQ DGLIFSQAGA LEVQAGSLDN RQGTLQAQGD
61 NRLRIGGALD NQAGRLDSRA GNLDLQSGSL XNGAGGVLNX AXGWLXLVTG LFDNSAGVTQ
121 AQSLEIRAGQ GVRNQQGHLS ALGGDNRIVT ADFDNQGGGL YASGLLSLDG QRFLNQGAAA
181 GQGGKVGAGR IDFSLAGALA NRFGQLESES ELHLRAAAID NSGGSLRALG RSGSTRLVAG
241 DLNNAYGVLE SANQDLDLQL GSLANAGGRI LHTGNGTFGL DSGQVIRAGG ELTTNGLLDI
301 RASEWTNSSV LQAGRLNLDI GTFRQTAEGK LLAVQSFTGR GGDWSNDGLL ASNGSLRLEL
361 SGGYRGNGRA TSLGDFALNA ASLDLGNAAS LAGGANVTLG AGNLLVNRGR ITAAGDLVAS
421 AASLNNYGTL GGGGNLRLNA PALLNERGLL FSGADMTLRA GDITNLYGDV YSLGRLDIAR
481 DDAGGWANRL ENISGNLEST GDMRFSVSSL LNRRETLEIE GDLQNSAIGV RCTGCQLSER
541 WGKTRSSSEL VWIREYKSTL GDSSAAASIT AGRDLLVVGA SLQNIASNIS AVRDATLSLS
601 NFENKGYALG EYAVRGVYSP PSKFGEELLM RILAYNAVND PSYGEGYAST GGRLPNIHYF
661 DKNFNEKVSP LEVIHGNGKN GGPGWHLYFG TLDVEYPDTD RWNKAIGRIP APNYSSKKTD
721 AIPDLLKGLA PLDELTINKG ANSTVGAVVQ AGGRVTVNAA ESFNNSVLQG FQAVQETQLP
781 HQDIAVSSTT SAVVTLKSQL PADLARQQIN PLTLPGFSLP QGQNGLFRLA SQGAQVNQAS
841 GALKSASDLT QSGHGVSVSA QTGSGASGWS TQARRVGDDR VTSLAGSAYQ GRVAEAIDAL
901 RASAPISGDG GNTGRFQAGE HQATTGLGGL VEGNASGHSG NGVILADLRG GLPSFSSLPA
961 SDHVQGTVPG HDGNGTILAN WQGAQATVQA SPSTVRVEGV VSSPGGNGSI LADLPAEQSS
1021 VQALPSAVRA QGSLPRLEER SALLAEPPVG QPALQTLPSV ARVEGVPSNA TPSNSHKYLI
1081 ETNPALTELK QFLNSDYLLG GLGINPDDSK KRLGDGLYEQ RLVREAIVQR TGQRFIAGLN
1141 SDEAMFRYLM DNAIASKDVL GLTPGVTLSA AQVAALTHDI VWLEEVEVNG EKVLAPVVYL
1201 AQAEGRLGPN GALIQGRDVN LITGGDLRNA GTLRAQNDLS ATAGNIDNSG LIEAGNRLDL
1261 LASGSIRNDQ GGIIAGREVS LSALTGDVIN ERTVTQHQSS YRGTGTTEAF ADSAARIEAA
1321 QKLTVSAGRD VANIGGVIDS KGDLALQGGR DVLVSAAVAE RGWTAGSQAY QTQTTQMGAE
1381 VVAGRDISVS AGRDISVVGS RIDARRDVTF EAGRDVGLVA AANEEHAYGK TKKVTFQDDK
1441 ITQQATRVDA GGDLAINAGQ DLRLVASQAS AGDEAYLVAG DKLELLAAND SSYYLYDKKS
1501 KGSFGSKKTR RDEITDVTAV GSQISSGGDL TLLSGGDQTY QGAKLESGND LAIVSGGAVT
1561 FEAVKDLHQE SHEKSKGDLA WQSSKGKGQT DETVRQSQIV AQGNLAIKAV EGLKIDLKHI
1621 DQKTVSQTID AMVQADPQLA WLKQMEQRGD VDWRRVQELH DSWKYSNSGL GVGAQLAIAI
1681 VVAYFTAGAA SAALGSMAGV GAGSGSMMAA AGSTAMVQAG TAVGTAAAGW ANAAGTAVAM
1741 GMASNGAIST INNRGNLGDV VKDVTSSDAL RGYVVAGTTA GLTAGVYDKW TSTQTGTSTA
1801 LPNTGAVAPA AGLGTWQGVG QFTSNQLLQN GTSVLLDRAL GGKGSLGDAL QNSLANAFAA
1861 YGFKLIGDTT HGVLDDGSLG KIGLHALMGG LAAEAVGGDF RTGALAAGVN EALVDSLAKQ
1921 YASLPIDDKK GLLIMSSQLI GVLAASTQGD ADAKSLQTGA WVAGNATQHN YLSHWQEEKK
1981 RQEVDGCKDK QLCKTGIEAK WAIISAQQDV GIVVGVGGGI GLSTAETAVG VYELVKNWRE
2041 TYAALEQLAT SPEFRQQFGD NYLKGLEERA AFLTQAYEDA GWQGSVTAGV EGGRFAAELV
2101 GVLTAVKGGA QITAKLPTAA KNLVNAIAES PVSGSMSSQL GAVGDLGRLG GGGKGYVDIL
2161 SHEAKQHILY GDKPGSGGHL WPGQAGKTVF PQNWSADKIV HEVGDIATSP STKWYAQTGT
2221 GGVYTSKGDP AKWVAYEVRD GVRMRVVYQP ATGKVITAFP DNAPIPPYKP IK
//