LOCUS       AZN92176.1               872 aa    PRT              BCT 18-DEC-2018
DEFINITION  Pseudomonas aeruginosa fimbrial biogenesis outer membrane
            usher protein protein.
ACCESSION   CP032541-2238
PROTEIN_ID  AZN92176.1
SOURCE      Pseudomonas aeruginosa
  ORGANISM  Pseudomonas aeruginosa
            Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6264451)
  AUTHORS   Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H.
  TITLE     Attenuated P. aeruginosa strain PAO1 with in-frame deletion of the
            following genes: toxA, plcH, phzM, wapR, and aroA
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6264451)
  AUTHORS   Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-SEP-2018) BioScience, Los Alamos National Laboratory,
            PO Box 1663 M888, Los Alamos, NM 87545, USA
COMMENT     Bacteria and source DNA available from Dr. Hongwei Yu.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 20-SEP-2018
            Assembly Method           :: Bowtie2 v. 2018-09-20
            Assembly Name             :: PGN5
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: NC_002516.2
            Genome Coverage           :: 217.64x
            Sequencing Technology     :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 09/26/2018 16:28:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,903
            CDS (total)                       :: 5,840
            Genes (coding)                    :: 5,779
            CDS (coding)                      :: 5,779
            Genes (RNA)                       :: 63
            rRNAs                             :: 4 (5S)
            complete rRNAs                    :: 4 (5S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            Pseudo Genes (ambiguous residues) :: 12 of 61
            Pseudo Genes (frameshifted)       :: 22 of 61
            Pseudo Genes (incomplete)         :: 18 of 61
            Pseudo Genes (internal stop)      :: 13 of 61
            Pseudo Genes (multiple problems)  :: 4 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Pseudomonas aeruginosa"
                     /mol_type="genomic DNA"
                     /strain="PGN5"
                     /db_xref="taxon:287"
                     /country="USA: WV, Huntington"
                     /collection_date="21-Nov-2017"
                     /collected_by="Progenesis Technologies, LLC"
                     /identified_by="Progenesis Technologies, LLC"
                     /note="genotype: PAO1 toxA-, plcH-, phzM-, wapR-, aroA-"
     protein         /locus_tag="PGN5_11275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MTYRHERRCR TGTALMAGGM ALAASAFGHA QPGYEFDDRL LLGSSLGGGD LSRFNQDGRI
       61 DPGRYHVDVY LNERFASRSE VSFRANPASG AVEPCLDEDF LRQRLGAKPG DDPRKSGDGR
      121 HCAFLGARLP GSRFSLDVAR LRLDLSVPQA LLDLKPRGYV SPEEWDAGDS MGFVNYDTNL
      181 YRSEYRGGES GRSDYAYVGL NSGINLGLWR LRHQSNYTYS RYNGQARRKW NSIRTYAQRA
      241 LPAWRSELTA GESYTAGNLL GSIGYRGLSL ATDDRMLPES LRRYAPQVRG TAATAARVVI
      301 SQNGRKIREV NVAPGPFVID DLYDSAYAGD LDVQVFEADG SVSSFSVPFA SVPESMRPGL
      361 SRYSFTLGQA RQYGDGDDLF ADFTYQRGMS NALTANLGLR VADDYLAMLG GGVLATRFGA
      421 FGLNSTYSSA RVEDGARKQG WRIGLDYSRT FQPTGTTLTL AGYRYSTEGY RELGDVLGSR
      481 DALRHGDTWD SGSYKQRNQF NLLVSQALGG YGNLYLSGSS SDFYDGKSRD TQLQFGYSNT
      541 WGQLSYNLAW SRQTTTYYQE QGDQDPGVEL LRRDRRSGQR NDTLTLSVSM PLGSSSRAPT
      601 LSAMATRRSG DSRGGSLQTG LNGTLGDERT WSYALSANRD SEVADTTWNG TLQKQAALAT
      661 VNAGYAQGDR YRQYSGGIRG ALVAHRDGLT LGPSVGDTFA LVEAKGASGA AIRGGQGARI
      721 DGNGYALAPS LSPYRYNPIS LDPVGIDPDA ELLETERKVA PYAGASVRVT FRTLTGHPLL
      781 IQARREDGSV LPLGAVVVDD GGAAIGMVGQ GGQVYARAEN QRGRLLVQWG TARKERCELP
      841 YDLAGVSRDQ ALIRLRGTCR AATTDSNLEN AR
//