LOCUS AZN92176.1 872 aa PRT BCT 18-DEC-2018 DEFINITION Pseudomonas aeruginosa fimbrial biogenesis outer membrane usher protein protein. ACCESSION CP032541-2238 PROTEIN_ID AZN92176.1 SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6264451) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Attenuated P. aeruginosa strain PAO1 with in-frame deletion of the following genes: toxA, plcH, phzM, wapR, and aroA JOURNAL Unpublished REFERENCE 2 (bases 1 to 6264451) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Direct Submission JOURNAL Submitted (25-SEP-2018) BioScience, Los Alamos National Laboratory, PO Box 1663 M888, Los Alamos, NM 87545, USA COMMENT Bacteria and source DNA available from Dr. Hongwei Yu. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 20-SEP-2018 Assembly Method :: Bowtie2 v. 2018-09-20 Assembly Name :: PGN5 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 217.64x Sequencing Technology :: Illumina NextSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 09/26/2018 16:28:44 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,903 CDS (total) :: 5,840 Genes (coding) :: 5,779 CDS (coding) :: 5,779 Genes (RNA) :: 63 rRNAs :: 4 (5S) complete rRNAs :: 4 (5S) tRNAs :: 55 ncRNAs :: 4 Pseudo Genes (total) :: 61 Pseudo Genes (ambiguous residues) :: 12 of 61 Pseudo Genes (frameshifted) :: 22 of 61 Pseudo Genes (incomplete) :: 18 of 61 Pseudo Genes (internal stop) :: 13 of 61 Pseudo Genes (multiple problems) :: 4 of 61 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="PGN5" /db_xref="taxon:287" /country="USA: WV, Huntington" /collection_date="21-Nov-2017" /collected_by="Progenesis Technologies, LLC" /identified_by="Progenesis Technologies, LLC" /note="genotype: PAO1 toxA-, plcH-, phzM-, wapR-, aroA-" protein /locus_tag="PGN5_11275" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_250820.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MTYRHERRCR TGTALMAGGM ALAASAFGHA QPGYEFDDRL LLGSSLGGGD LSRFNQDGRI 61 DPGRYHVDVY LNERFASRSE VSFRANPASG AVEPCLDEDF LRQRLGAKPG DDPRKSGDGR 121 HCAFLGARLP GSRFSLDVAR LRLDLSVPQA LLDLKPRGYV SPEEWDAGDS MGFVNYDTNL 181 YRSEYRGGES GRSDYAYVGL NSGINLGLWR LRHQSNYTYS RYNGQARRKW NSIRTYAQRA 241 LPAWRSELTA GESYTAGNLL GSIGYRGLSL ATDDRMLPES LRRYAPQVRG TAATAARVVI 301 SQNGRKIREV NVAPGPFVID DLYDSAYAGD LDVQVFEADG SVSSFSVPFA SVPESMRPGL 361 SRYSFTLGQA RQYGDGDDLF ADFTYQRGMS NALTANLGLR VADDYLAMLG GGVLATRFGA 421 FGLNSTYSSA RVEDGARKQG WRIGLDYSRT FQPTGTTLTL AGYRYSTEGY RELGDVLGSR 481 DALRHGDTWD SGSYKQRNQF NLLVSQALGG YGNLYLSGSS SDFYDGKSRD TQLQFGYSNT 541 WGQLSYNLAW SRQTTTYYQE QGDQDPGVEL LRRDRRSGQR NDTLTLSVSM PLGSSSRAPT 601 LSAMATRRSG DSRGGSLQTG LNGTLGDERT WSYALSANRD SEVADTTWNG TLQKQAALAT 661 VNAGYAQGDR YRQYSGGIRG ALVAHRDGLT LGPSVGDTFA LVEAKGASGA AIRGGQGARI 721 DGNGYALAPS LSPYRYNPIS LDPVGIDPDA ELLETERKVA PYAGASVRVT FRTLTGHPLL 781 IQARREDGSV LPLGAVVVDD GGAAIGMVGQ GGQVYARAEN QRGRLLVQWG TARKERCELP 841 YDLAGVSRDQ ALIRLRGTCR AATTDSNLEN AR //