LOCUS AZN92015.1 775 aa PRT BCT 18-DEC-2018 DEFINITION Pseudomonas aeruginosa pyrroloquinoline quinone biosynthesis protein PqqF protein. ACCESSION CP032541-2067 PROTEIN_ID AZN92015.1 SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6264451) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Attenuated P. aeruginosa strain PAO1 with in-frame deletion of the following genes: toxA, plcH, phzM, wapR, and aroA JOURNAL Unpublished REFERENCE 2 (bases 1 to 6264451) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Direct Submission JOURNAL Submitted (25-SEP-2018) BioScience, Los Alamos National Laboratory, PO Box 1663 M888, Los Alamos, NM 87545, USA COMMENT Bacteria and source DNA available from Dr. Hongwei Yu. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 20-SEP-2018 Assembly Method :: Bowtie2 v. 2018-09-20 Assembly Name :: PGN5 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 217.64x Sequencing Technology :: Illumina NextSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 09/26/2018 16:28:44 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,903 CDS (total) :: 5,840 Genes (coding) :: 5,779 CDS (coding) :: 5,779 Genes (RNA) :: 63 rRNAs :: 4 (5S) complete rRNAs :: 4 (5S) tRNAs :: 55 ncRNAs :: 4 Pseudo Genes (total) :: 61 Pseudo Genes (ambiguous residues) :: 12 of 61 Pseudo Genes (frameshifted) :: 22 of 61 Pseudo Genes (incomplete) :: 18 of 61 Pseudo Genes (internal stop) :: 13 of 61 Pseudo Genes (multiple problems) :: 4 of 61 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="PGN5" /db_xref="taxon:287" /country="USA: WV, Huntington" /collection_date="21-Nov-2017" /collected_by="Progenesis Technologies, LLC" /identified_by="Progenesis Technologies, LLC" /note="genotype: PAO1 toxA-, plcH-, phzM-, wapR-, aroA-" protein /gene="pqqF" /locus_tag="PGN5_10420" /EC_number="3.4.24.-" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_250663.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MDHHAQHHPR SHACVLPNGL RLHLAHDPAA SRAAAWLRVA AGSHDEPSAH PGLAHFLEHL 61 SFLGGAAFPG DERLMPWLQV RGGQVNASTL GKTTDYFFEV TAEHLGAGLA RLIDMLARPL 121 LDIDAQRRER EVLEAEYLAR SADEQTLIDA ALALGLPAGH PLRRFAAGRR DSLALESDAF 181 QRALREFHAA HYHAGNCQLW LQGPQTLDEL ERLAQRACAD LPGRAPGASP PPPPLLPFAC 241 EALALRLPGP PRLVLGFALD ALRGADEQTL LAFAELLGDR SPGGLLAALG EQGLGESVAL 301 RVVHRDARQA LLALTFELFD GSAAAALEAA FFDWLGALRD DAASLLAARR PLLAEPTAPL 361 ERLRQRVLGL PAEIRPACLD ALRADRCLRL HLDSELDGAE ARWSAGFRLS VAPVAAAPPL 421 AAQRHAWRFE LPLPPSAAAE GALFLRWRFP GVPARSRFLA LRQALRPLCG QARLGGVEMG 481 LEALGEDWSL SLLGPRDRLE AAVRPALARL LAAPPDWRAN GERLSSAERR RSATGLPIRQ 541 LLDALPGLLG EPLAEVDDWR RTRWDALVMQ AAMPDPRWMP GQAAGERLEP LPPRPGRHRR 601 ELAVDGESAL LLFCPLPTQE VPMEAAWRLL ARLHEPAFQR RLRDELQLGY ALFCGFREVG 661 ARRGLLFAAQ SPRACPARLL EHMETFLQRS AEALAQLPAR RLAGLRKALA DDLRRAPGSF 721 AERARRAWAE HLGGGAGRSR LLAEAALGLS GDDLLAAQAR LLEARGGWWV LSSRR //