LOCUS AZN90844.1 494 aa PRT BCT 18-DEC-2018 DEFINITION Pseudomonas aeruginosa 2-methylcitrate dehydratase protein. ACCESSION CP032541-833 PROTEIN_ID AZN90844.1 SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6264451) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Attenuated P. aeruginosa strain PAO1 with in-frame deletion of the following genes: toxA, plcH, phzM, wapR, and aroA JOURNAL Unpublished REFERENCE 2 (bases 1 to 6264451) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Direct Submission JOURNAL Submitted (25-SEP-2018) BioScience, Los Alamos National Laboratory, PO Box 1663 M888, Los Alamos, NM 87545, USA COMMENT Bacteria and source DNA available from Dr. Hongwei Yu. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 20-SEP-2018 Assembly Method :: Bowtie2 v. 2018-09-20 Assembly Name :: PGN5 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 217.64x Sequencing Technology :: Illumina NextSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 09/26/2018 16:28:44 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,903 CDS (total) :: 5,840 Genes (coding) :: 5,779 CDS (coding) :: 5,779 Genes (RNA) :: 63 rRNAs :: 4 (5S) complete rRNAs :: 4 (5S) tRNAs :: 55 ncRNAs :: 4 Pseudo Genes (total) :: 61 Pseudo Genes (ambiguous residues) :: 12 of 61 Pseudo Genes (frameshifted) :: 22 of 61 Pseudo Genes (incomplete) :: 18 of 61 Pseudo Genes (internal stop) :: 13 of 61 Pseudo Genes (multiple problems) :: 4 of 61 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="PGN5" /db_xref="taxon:287" /country="USA: WV, Huntington" /collection_date="21-Nov-2017" /collected_by="Progenesis Technologies, LLC" /identified_by="Progenesis Technologies, LLC" /note="genotype: PAO1 toxA-, plcH-, phzM-, wapR-, aroA-" protein /gene="prpD" /locus_tag="PGN5_04185" /EC_number="4.2.1.79" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_249483.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSANVDLNQR PDYDAVLQDI ADYVLDYRID STEALDTARN CLMDTLGCGL LALRFPECTK 61 HLGPLVEGTL VPHGARVPGT SFRLDPVKAA WDIGCIVRWL DYNDTWLAAE WGHPSDNLGG 121 ILAVADHLSQ KRLANGEAPL SMRQVLEAMI MAHEIQGVIA LENSFNRVGL DHVLLVKVAS 181 TAVCAKLMGA DREQLLAALS HAFVDGQALR TYRHAPNAGS RKSWAAGDAT SRGVRLADIA 241 LRGEMGIPGV LSAPQWGFYD VLFSHTSKDL ATKPEDKRRF SFPQGYGSYV MENVLFKISF 301 PAEFHAQTAA EAAVRLHPLV KDRLQRISRI VITTHESAIR IISKVGPLAN PADRDHCLQY 361 MTAVPLIFGD LVAEHYEDAF HAAHPLIDRL REKMEIVEEP RYSREYLEAD KRSIANAVEV 421 FFDDGSSTGQ VAVEYPLGHR RRRAEGIPLL QEKFKANLAT RFPPQRCQRI FDLCSHQASL 481 EATPVNRFMD LLAI //