LOCUS AZN90458.1 2472 aa PRT BCT 18-DEC-2018
DEFINITION Pseudomonas aeruginosa response regulator protein.
ACCESSION CP032541-436
PROTEIN_ID AZN90458.1
SOURCE Pseudomonas aeruginosa
ORGANISM Pseudomonas aeruginosa
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 6264451)
AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H.
TITLE Attenuated P. aeruginosa strain PAO1 with in-frame deletion of the
following genes: toxA, plcH, phzM, wapR, and aroA
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 6264451)
AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H.
TITLE Direct Submission
JOURNAL Submitted (25-SEP-2018) BioScience, Los Alamos National Laboratory,
PO Box 1663 M888, Los Alamos, NM 87545, USA
COMMENT Bacteria and source DNA available from Dr. Hongwei Yu.
Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: 20-SEP-2018
Assembly Method :: Bowtie2 v. 2018-09-20
Assembly Name :: PGN5
Genome Representation :: Full
Expected Final Version :: Yes
Reference-guided Assembly :: NC_002516.2
Genome Coverage :: 217.64x
Sequencing Technology :: Illumina NextSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 09/26/2018 16:28:44
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 4.6
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 5,903
CDS (total) :: 5,840
Genes (coding) :: 5,779
CDS (coding) :: 5,779
Genes (RNA) :: 63
rRNAs :: 4 (5S)
complete rRNAs :: 4 (5S)
tRNAs :: 55
ncRNAs :: 4
Pseudo Genes (total) :: 61
Pseudo Genes (ambiguous residues) :: 12 of 61
Pseudo Genes (frameshifted) :: 22 of 61
Pseudo Genes (incomplete) :: 18 of 61
Pseudo Genes (internal stop) :: 13 of 61
Pseudo Genes (multiple problems) :: 4 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Pseudomonas aeruginosa"
/mol_type="genomic DNA"
/strain="PGN5"
/db_xref="taxon:287"
/country="USA: WV, Huntington"
/collection_date="21-Nov-2017"
/collected_by="Progenesis Technologies, LLC"
/identified_by="Progenesis Technologies, LLC"
/note="genotype: PAO1 toxA-, plcH-, phzM-, wapR-, aroA-"
protein /locus_tag="PGN5_02185"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_249104.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MGDRHDYVAL EWVKGEIAET LKQARQALEA FVENPQDPTR MRFCLTYVHQ VQGTLQMVEF
61 YGAALLAEEM EQLVQALLDG RVPNQGEALE VLMQAILQLP VYLDRIQTAR RDLPMVVLPL
121 LNDLRAARGE KLLSETSLFA PDLSQRQPQL DGEAIAQLRT DELGGLLRKL RQTQQMALVG
181 LLRNQDVATS LGYLARVYAR LEGLCREAPL GPLWSIASGL VEGLANGSVV NSASVRTLLR
241 QLDRELKRLV EQGADGLNQA APDELVKNLL FYVAKAPSQS PRIRALKEQY RLDEALPDHE
301 TVDAERARLA GPDRDAMRSV VGALCEELVR IKDSLDLFVR SDRGHPSELD ALLAPLKQIA
361 DTLAVLGFGQ PRKVILDQLD VIHALAQGRR EPSDAILMDV AGALLYVEAT LAGMAGPGDE
421 RNSEESRLPT TDVAQIHQLV IKEARNGLEQ AKDAIIEFIA SQWNHEHLAR VPELLTQVRG
481 GLAMIPLERA ATLLETCNRY IQEQLLARKA VPDWQSLDTL ADAITSVEYY LERLSEDHAS
541 QSDLILDVAE DSLANLGYTL KPNSSAPAEP GLSGPAAIES PAAEPERPEA VVEVAETAEQ
601 PPADTAPAEA AREDAPQLAS DDNWTLGEVA PDAGEPSLDL ALDLPLDDSA EVPPALPEVV
661 EESGQPQSTS APARSLDDFS LDEIDLSGLD LPADAAPASG PAALADWSLP EQWGLGDDLA
721 QPAQAGETLD LSLEEPALSF DAPLESLEPL PALEPFDGSA EQELVLDALD PLPLDVALPE
781 AEGEVSAWEG SSLEELDLSD LDLPEVQLPE AEAEAPPAAE ALASEAPALS LAEVMAAPVQ
841 PINPPAQNVP VSLLPPPADE EPVDEELREV FIEEAGEVLE TIGRYLPAWK ADHDDREALT
901 EVRRAFHTLK GSGRMVRALV IGELAWSIEN LFNRVLDRSI AASEPVQRVV DQVVALLPEL
961 VEEFAANAQR QRDDVDLLAA TAHALAKGEP LPEPPAPDDG GVPPEAGAEQ PSSLDNGVQA
1021 PPLADAPQAA AEAQSDVELL DPQLLEIFTN EAETHLEALV GFLADCAREL PQPVTDALQR
1081 ALHTLKGSAH MAGILPIAEI ATPLEKLVKE YKSNLLAFDL REAELLHDAE QLFRIGLEQV
1141 GAQRPLNPIP GSDALLERIE ALHQERIASL EAERYSDAGE RRDPLLIEAF LVEGMDILLD
1201 AEDLLERWHE HPQERQELSA LREELSTLDR GARHAELPQV EELCQALLAL YDAVEEGRLA
1261 VSPAFFEEAR QAHEALIGMM DQVAAGLQVT PRPERVAALQ ELLEAPAAEA VPFIDPESLG
1321 ADDFPPEDEE PALPEAVYEE AGAPAEETVP AAPAPAPGRE LDEEMVSIFL EEAVDILESA
1381 GQALAQWQAE PGALSSLSAL QRDLHTLKGG ARMAEIAEIG DLAHELEALY EGLVDRRYQH
1441 SPQLAGLLQA CHDRLAEQLD QLSAGQPLAD PHDLIQSIRR FRQGPVAEAA TPGEAESPVE
1501 ELVAPAVEEP AAPAAEAFEE RDPELVEIFL EEGFDILDSA AAALQRWMDD VDNTIELEAL
1561 QRDLHTLKGG ARMAEIGEIG DLAHELEFLY EGLCGGRLRA SPALFGLLQR CHDELAEMLE
1621 AVRGHRTLPD GQALIAEIRR LRSDPDEQLS VPTSVSLKPL AAKGAAADES EILDIFLEEA
1681 DDLLENLELA LGRWDGGNGD AQPLDDLLRI LHTLKGGARL AGQTELGNLA HDLEQHLTDA
1741 QQQGAPWPDS LLLDAQSGLE GLQRQVDLLR ERLAEDDEAG ERPEPAQALV QADDTDRAVA
1801 SALAELTRLA PAAGAIMAAE AAPPAAPATT LPFVRKAQEA AQEAASRRAP QELVKVPAEL
1861 LENLVNLAGE TSIFRGRVEQ QVSDVGFTLG EMESTIERVR DQLRRLDTET QAQILSRHQA
1921 DAERAGYEEF DPLEMDRYSQ LQQLSRALFE SASDLLDLKE TLAAKNRDAE TLLLQQARVN
1981 TELQEGLMRT RMVPFDRLVP RLRRIVRQVA GELGKQVEFV VGNADGEMDR TVLERIVAPL
2041 EHMLRNAVDH GIESGETRRA AGKPEHGTIR LNIGREGGDI LLTLSDDGAG IRLDAVRRKA
2101 IERGLMSADS DLSDHEVLQF VLESGFSTAE KVTQISGRGV GLDVANSEVK QLGGSVSIQT
2161 EPGQGTRFNV RLPFTVSVNR ALMVLSGEDL YAVPLNTIEG IVRVSPYELE ALYDQRGEAG
2221 LDTPSFEYAG QSYELKYLGE LLNNGQEPKL VGQSLPLPVI LVRSSEHAVA VQVDSLAGSR
2281 EIVVKSLGPQ FAGVAGISGA TLLGDGRVVV ILDLLATIRS RHALLGQESR RERLALRQEM
2341 AASESEQQRP PLVMVVDDSV TVRKVTTRLL ERNGMNVLTA KDGVDAIAQL QEHRPDILLL
2401 DIEMPRMDGF EVATLVRHDE RLGNLPIIMI TSRTGEKHRE RALGIGVNQY LGKPYQETEL
2461 LEAIQSLVGQ HE
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