LOCUS       AZN90327.1               760 aa    PRT              BCT 18-DEC-2018
DEFINITION  Pseudomonas aeruginosa GGDEF domain-containing protein protein.
ACCESSION   CP032541-302
PROTEIN_ID  AZN90327.1
SOURCE      Pseudomonas aeruginosa
  ORGANISM  Pseudomonas aeruginosa
            Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6264451)
  AUTHORS   Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H.
  TITLE     Attenuated P. aeruginosa strain PAO1 with in-frame deletion of the
            following genes: toxA, plcH, phzM, wapR, and aroA
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6264451)
  AUTHORS   Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-SEP-2018) BioScience, Los Alamos National Laboratory,
            PO Box 1663 M888, Los Alamos, NM 87545, USA
COMMENT     Bacteria and source DNA available from Dr. Hongwei Yu.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 20-SEP-2018
            Assembly Method           :: Bowtie2 v. 2018-09-20
            Assembly Name             :: PGN5
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: NC_002516.2
            Genome Coverage           :: 217.64x
            Sequencing Technology     :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 09/26/2018 16:28:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,903
            CDS (total)                       :: 5,840
            Genes (coding)                    :: 5,779
            CDS (coding)                      :: 5,779
            Genes (RNA)                       :: 63
            rRNAs                             :: 4 (5S)
            complete rRNAs                    :: 4 (5S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            Pseudo Genes (ambiguous residues) :: 12 of 61
            Pseudo Genes (frameshifted)       :: 22 of 61
            Pseudo Genes (incomplete)         :: 18 of 61
            Pseudo Genes (internal stop)      :: 13 of 61
            Pseudo Genes (multiple problems)  :: 4 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Pseudomonas aeruginosa"
                     /mol_type="genomic DNA"
                     /strain="PGN5"
                     /db_xref="taxon:287"
                     /country="USA: WV, Huntington"
                     /collection_date="21-Nov-2017"
                     /collected_by="Progenesis Technologies, LLC"
                     /identified_by="Progenesis Technologies, LLC"
                     /note="genotype: PAO1 toxA-, plcH-, phzM-, wapR-, aroA-"
     protein         /locus_tag="PGN5_01515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MSPRLSALRL SLAYLAIAIA WAFLSDHLLQ NQVQDHDQLV FWMTAKRLFF FAATGLLLYL
       61 YLVRQFRRKA QAYDELHGSE QRLNRALEAV RDGLWDWDLV TDRMFVSPGY AALIGLAPEE
      121 LGDPIETWKK RLHPEEYATV LEAHRNHLQG LTDNLDHIYR LRHKDGDYRW IHSRGRVLRD
      181 ALGKPLHYTG VARDITLQRL KEDHLRQAAA VFDSTREGVL VTDAQAVIVH VNPSFERITG
      241 YRSEDVLGKT PAILRSGRQD QAFYQRLWLA LREQDVWSGE IWNRRKSGEI YPQWLHIRAV
      301 RNDQGQLTHY VGVFSDLSSI KRSENELDFL AHHDSLTGLP NRVLLRERIE QALENGKDRT
      361 VAGALLLIDL DHFKHINDSL GHTTGDMLLK EVSKRLQHQL DERCLLSRLG GDEFAILVEN
      421 DDPEAVARLS QRILDGFNAP FDIHCQPIYI SASLGVSLYP EDASDVDHLM QHADAALFQA
      481 KDSGRNAYAF YTRVLTARAR AHVQVESALR HALEHDELRV HYQPVHDLAS GRIVGVESLV
      541 RWQHPERGLV PPGEFVPVAE ECGLIAALDN WVLKRACRQM REWQQRGVEL EFVAVNVSSR
      601 LFNRGGLEER IANALEESGL EPRYLELEVT ESAVMEDFEQ SLNLLCRLRI LGVNLAIDDF
      661 GTGYSSLMRL KRLPVHKLKI DQGFVAGLPG AVDDAAIARA IVALAQSMGL RVVAEGIEHQ
      721 DQALFLREHG CDFGQGYWYG RPQPAEALRF DLPPVALPED
//