LOCUS AZN90208.1 444 aa PRT BCT 18-DEC-2018 DEFINITION Pseudomonas aeruginosa OprD family porin protein. ACCESSION CP032541-175 PROTEIN_ID AZN90208.1 SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6264451) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Attenuated P. aeruginosa strain PAO1 with in-frame deletion of the following genes: toxA, plcH, phzM, wapR, and aroA JOURNAL Unpublished REFERENCE 2 (bases 1 to 6264451) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Direct Submission JOURNAL Submitted (25-SEP-2018) BioScience, Los Alamos National Laboratory, PO Box 1663 M888, Los Alamos, NM 87545, USA COMMENT Bacteria and source DNA available from Dr. Hongwei Yu. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 20-SEP-2018 Assembly Method :: Bowtie2 v. 2018-09-20 Assembly Name :: PGN5 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 217.64x Sequencing Technology :: Illumina NextSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 09/26/2018 16:28:44 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,903 CDS (total) :: 5,840 Genes (coding) :: 5,779 CDS (coding) :: 5,779 Genes (RNA) :: 63 rRNAs :: 4 (5S) complete rRNAs :: 4 (5S) tRNAs :: 55 ncRNAs :: 4 Pseudo Genes (total) :: 61 Pseudo Genes (ambiguous residues) :: 12 of 61 Pseudo Genes (frameshifted) :: 22 of 61 Pseudo Genes (incomplete) :: 18 of 61 Pseudo Genes (internal stop) :: 13 of 61 Pseudo Genes (multiple problems) :: 4 of 61 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="PGN5" /db_xref="taxon:287" /country="USA: WV, Huntington" /collection_date="21-Nov-2017" /collected_by="Progenesis Technologies, LLC" /identified_by="Progenesis Technologies, LLC" /note="genotype: PAO1 toxA-, plcH-, phzM-, wapR-, aroA-" protein /locus_tag="PGN5_00875" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_248852.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MRNLFALTPM ALALCTASAA WADEGEAKEG FIEGSSLQLL TRNYYFNHDR RHASGHDSKE 61 WAQGFIATFQ SGYTPGVVGF GVDAYGMLGL KLDGGGGTGG TSILPITSPS KEGYESGKAP 121 DEFSSGGAAL KIRAFDTELK LGDQFLSNPV VAGGESRMLP QTFRGVSLTN NSFEDLTLTA 181 GQVSFTKYYN QSGHRRLGSY YGELPGDRDS HHLSWLGGTW GGIEGFTSSL YAAELQNVWK 241 QYYADVDYTY EIDDNWSLNP GAHYYKTVDS GDSLLGRIDN NTYSLHFAVG YRQHTVTAVL 301 QKVNGNTPFD YINQGDSIFL DNSQQYSDFN GPNEKSWKLQ YDYDFVALGL PGLSASASYS 361 RGKLDLTRVD PDSPGYGGWY SADGKNAKHW ERDLDLQYVV QGGPAKDLSL RLRWATHRGT 421 GGYSAVDNDI DEYRVIVDYP IDVF //