LOCUS AZN90175.1 475 aa PRT BCT 18-DEC-2018 DEFINITION Pseudomonas aeruginosa GABA permease protein. ACCESSION CP032541-140 PROTEIN_ID AZN90175.1 SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6264451) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Attenuated P. aeruginosa strain PAO1 with in-frame deletion of the following genes: toxA, plcH, phzM, wapR, and aroA JOURNAL Unpublished REFERENCE 2 (bases 1 to 6264451) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Direct Submission JOURNAL Submitted (25-SEP-2018) BioScience, Los Alamos National Laboratory, PO Box 1663 M888, Los Alamos, NM 87545, USA COMMENT Bacteria and source DNA available from Dr. Hongwei Yu. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 20-SEP-2018 Assembly Method :: Bowtie2 v. 2018-09-20 Assembly Name :: PGN5 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 217.64x Sequencing Technology :: Illumina NextSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 09/26/2018 16:28:44 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,903 CDS (total) :: 5,840 Genes (coding) :: 5,779 CDS (coding) :: 5,779 Genes (RNA) :: 63 rRNAs :: 4 (5S) complete rRNAs :: 4 (5S) tRNAs :: 55 ncRNAs :: 4 Pseudo Genes (total) :: 61 Pseudo Genes (ambiguous residues) :: 12 of 61 Pseudo Genes (frameshifted) :: 22 of 61 Pseudo Genes (incomplete) :: 18 of 61 Pseudo Genes (internal stop) :: 13 of 61 Pseudo Genes (multiple problems) :: 4 of 61 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="PGN5" /db_xref="taxon:287" /country="USA: WV, Huntington" /collection_date="21-Nov-2017" /collected_by="Progenesis Technologies, LLC" /identified_by="Progenesis Technologies, LLC" /note="genotype: PAO1 toxA-, plcH-, phzM-, wapR-, aroA-" protein /gene="gabP" /locus_tag="PGN5_00700" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_248819.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSKVVLASQL PNKRNASLAP GLKQRHVTML SIAGVIGAGL FVGSGHAIAA AGPAALLAYL 61 IAGTLVVLVM RMLGEMAVAS PDTGSFSTYA DRSIGRWAGF TIGWLYWWFW VLVIPLEAIA 121 AAAILNAWFP AIDTWIFALA VTFLLTVTNL FSVARYGEFE FWFALLKVIA IIAFIVLGAV 181 AIVGGLPERE VSGLSSLMAS HGGFVPNGYG AVLGALLTTM FSFMGTEIVT IAAAESKDPA 241 KQITRATNSV IWRIGLFYLV SIFIVISIVP WNDPLLIQVG SYQRALELLD IPHAKLIVDL 301 VVLVAVASCL NSAIYTSSRM VFSLAKRGDA PSVLKLTNTA HVPRPAVLAS TAVGFLTTIV 361 NYFAPEKVFT FLLASSGAVA LLVYLVIAVA QLRMRKQLQA SGQPIEFRMW LYPWLTWAVI 421 LFIVAALSIM LIMPEHRHEV FATALLTIFT VCLGLLNARR KPRLGEDYAG KTARV //