LOCUS AZN90141.1 741 aa PRT BCT 18-DEC-2018 DEFINITION Pseudomonas aeruginosa type VI secretion system tip protein VgrG protein. ACCESSION CP032541-105 PROTEIN_ID AZN90141.1 SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6264451) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Attenuated P. aeruginosa strain PAO1 with in-frame deletion of the following genes: toxA, plcH, phzM, wapR, and aroA JOURNAL Unpublished REFERENCE 2 (bases 1 to 6264451) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Direct Submission JOURNAL Submitted (25-SEP-2018) BioScience, Los Alamos National Laboratory, PO Box 1663 M888, Los Alamos, NM 87545, USA COMMENT Bacteria and source DNA available from Dr. Hongwei Yu. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 20-SEP-2018 Assembly Method :: Bowtie2 v. 2018-09-20 Assembly Name :: PGN5 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 217.64x Sequencing Technology :: Illumina NextSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 09/26/2018 16:28:44 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,903 CDS (total) :: 5,840 Genes (coding) :: 5,779 CDS (coding) :: 5,779 Genes (RNA) :: 63 rRNAs :: 4 (5S) complete rRNAs :: 4 (5S) tRNAs :: 55 ncRNAs :: 4 Pseudo Genes (total) :: 61 Pseudo Genes (ambiguous residues) :: 12 of 61 Pseudo Genes (frameshifted) :: 22 of 61 Pseudo Genes (incomplete) :: 18 of 61 Pseudo Genes (internal stop) :: 13 of 61 Pseudo Genes (multiple problems) :: 4 of 61 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="PGN5" /db_xref="taxon:287" /country="USA: WV, Huntington" /collection_date="21-Nov-2017" /collected_by="Progenesis Technologies, LLC" /identified_by="Progenesis Technologies, LLC" /note="genotype: PAO1 toxA-, plcH-, phzM-, wapR-, aroA-" protein /gene="vgrG" /locus_tag="PGN5_00525" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_248785.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MALAQQTRLV RVDSPLGAEV LQLQRMEGRE ELGRPFAYEL ELISENPDLP LDGLLGKPAS 61 LALELHDGSR RHFHGIVAAC SQGSGNGQFA SYQVTLRPWL WLLTRTSDCR IFQNQKVPDI 121 IKQVFRDLGF SDFEDALSRS YREWEYCVQY RETSFDFVSR LMEQEGIYYW FRHEQSRHIL 181 VLSDAYGAHQ SPPNYASVPY YPPTLEQRER DHFYDWHMAR EVQSGSLSLN DYDFQRPGAR 241 LEVRSNIARS HAAADYPLYD YPGEYVQSQD GEQYARTRIE ALQARYERVR LRGRARGLGS 301 GHLFKLSGYP REDQNREYLV VGAEYRVVQE LYETGGGGVG AQFESELDCI DAGQAYRPLP 361 TTPLPIVRGP QTAVVVGPKG EEIWTDQYGR VKVHFHWDRH DQSNENSSCW IRVSQAWAGK 421 NWGSMQIPRI GQEVIVSFLE GDPDRPIITG RVYNAEQTVP YELPANATQS GMKSRSSKGG 481 TPANFNEIRM EDKKGAEQLF IHAEKNQDIE VENDETHWVG HDRTKTIDHD ETVHVKHDRT 541 ETVDNNETIT IGVDRTEKVG NNEKISIGAN RTEDVGSNET ISIGVDRTEK VGSNEKISIG 601 ANRTEDVGND ETISIGANRS ESVGNNETIS IGADRSESVG ANETIDIGGN QSTSIGKNES 661 RSVGQGRDTS VGKDDSLDVG KSFTLNAGDS ITLVTGAASI RMKKDGSIVI SGKNITIDGS 721 GAINVKADKN VVVKGRKILQ N //