LOCUS       AZN90124.1              1176 aa    PRT              BCT 18-DEC-2018
DEFINITION  Pseudomonas aeruginosa type VI secretion system membrane
            subunit TssM protein.
ACCESSION   CP032541-87
PROTEIN_ID  AZN90124.1
SOURCE      Pseudomonas aeruginosa
  ORGANISM  Pseudomonas aeruginosa
            Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6264451)
  AUTHORS   Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H.
  TITLE     Attenuated P. aeruginosa strain PAO1 with in-frame deletion of the
            following genes: toxA, plcH, phzM, wapR, and aroA
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6264451)
  AUTHORS   Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-SEP-2018) BioScience, Los Alamos National Laboratory,
            PO Box 1663 M888, Los Alamos, NM 87545, USA
COMMENT     Bacteria and source DNA available from Dr. Hongwei Yu.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 20-SEP-2018
            Assembly Method           :: Bowtie2 v. 2018-09-20
            Assembly Name             :: PGN5
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: NC_002516.2
            Genome Coverage           :: 217.64x
            Sequencing Technology     :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 09/26/2018 16:28:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,903
            CDS (total)                       :: 5,840
            Genes (coding)                    :: 5,779
            CDS (coding)                      :: 5,779
            Genes (RNA)                       :: 63
            rRNAs                             :: 4 (5S)
            complete rRNAs                    :: 4 (5S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            Pseudo Genes (ambiguous residues) :: 12 of 61
            Pseudo Genes (frameshifted)       :: 22 of 61
            Pseudo Genes (incomplete)         :: 18 of 61
            Pseudo Genes (internal stop)      :: 13 of 61
            Pseudo Genes (multiple problems)  :: 4 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Pseudomonas aeruginosa"
                     /mol_type="genomic DNA"
                     /strain="PGN5"
                     /db_xref="taxon:287"
                     /country="USA: WV, Huntington"
                     /collection_date="21-Nov-2017"
                     /collected_by="Progenesis Technologies, LLC"
                     /identified_by="Progenesis Technologies, LLC"
                     /note="genotype: PAO1 toxA-, plcH-, phzM-, wapR-, aroA-"
     protein         /gene="tssM"
                     /locus_tag="PGN5_00435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003176940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MKGFLNFFAR WVVPVLGLLA LSLIIWFLGP LLRLGNYEPL ASATSRWVLI VLLFLVWIGF
       61 RVLRIVQARR NAAKVMQSLA EVSAPDAASV ATAEELATLK QRMDEALALL KRAKLGGSER
      121 RNLYELPWYV IIGPPGSGKT TALMNSGLDF PLAAQMGAGA IRGVGGTRNC DWWFTDEAVL
      181 LDTAGRYTTQ DSHAQVDKAA WLGFLDLLKT QRKRRPIDGA FIAISLSDLL LGSDAERAAH
      241 AQAIRARIQE LYQQLGVRFP IYVMLTKFDL VPGFMEFFDS LNREERAQVW GMTFALDDGK
      301 SAEGPLAVFD SEFALLEQRL TARLVERLQQ ERDPARRDLV YGFPQQFAAL RECLGEFLNG
      361 VFKPNPYEER PLLRGLYFTS GTQEGSPIDR LIGSMAQSMN LDRQHLARQT GTGRSYFIER
      421 LFREVAFGER GLVGTNPKVE RRRKWLTIGA LSATALVVLA VTAVWIASYR ANQSYIAAVD
      481 QRVDPLARGI ESLSPAQRDV LAVLPQLNAV QNLAGDAPSW AEGYGLYQGD MLGEESASVY
      541 RKLLIAVFAP RLVTRIEEQL RSGGSSDFLY EGLKAYLMLG SPDHYDADFI KAWISLDWER
      601 NLPRDLSPEQ RQALHAHLDA LLERRPPSAR LDQDLVEDLR RQLQQLPVAQ RVYDRVKRQR
      661 LPKDVPDFRI SDAAGRDAPL VFARKSGKPL TDPLSGFFTY RGYREVFLTA SLSQAGTIAE
      721 EQWVLGRDLN DAGDAANLAL DVRRLYFQDY LRQWDDLLAD LTVVPITNVT QAADVLRILS
      781 GPTSPFRKLL EAVARETDLQ KGDRLVAAQV KKAADGTVDK LKQRLGSLVG QEEEGAREQP
      841 RQVDSDPISA HFAELNSLVS KGEGGNEPAP IDSLLEDMNA LYVQVSAMAG ASGDSLLGDA
      901 KNQVAAAASR VALSAERQPP VVQGLVKNVV NSTTSSMMGS VRNQLNAAWI SDVVSVYRQS
      961 LAGRYPIAAG SSRDATLEDF GHFFGAGGVM DSYFRQYLQP YVDTSASTWR WQPGAAQKLG
     1021 INPGVLHTFQ RAAAIRDAFF RSGGMQPTVR FELKPVTMDA AISQFILDLD GQQLTYDHGP
     1081 SRPVAMQWPS ANGLGVVRLT VTPPPSSGRS GLTLEGPWAW FRLLDQSDLE RGNSPDRFTL
     1141 RLRIDGSSIA CELRASSAFN PFKSRVVSGF SLPERL
//