LOCUS AZN90124.1 1176 aa PRT BCT 18-DEC-2018 DEFINITION Pseudomonas aeruginosa type VI secretion system membrane subunit TssM protein. ACCESSION CP032541-87 PROTEIN_ID AZN90124.1 SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6264451) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Attenuated P. aeruginosa strain PAO1 with in-frame deletion of the following genes: toxA, plcH, phzM, wapR, and aroA JOURNAL Unpublished REFERENCE 2 (bases 1 to 6264451) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Direct Submission JOURNAL Submitted (25-SEP-2018) BioScience, Los Alamos National Laboratory, PO Box 1663 M888, Los Alamos, NM 87545, USA COMMENT Bacteria and source DNA available from Dr. Hongwei Yu. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 20-SEP-2018 Assembly Method :: Bowtie2 v. 2018-09-20 Assembly Name :: PGN5 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 217.64x Sequencing Technology :: Illumina NextSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 09/26/2018 16:28:44 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,903 CDS (total) :: 5,840 Genes (coding) :: 5,779 CDS (coding) :: 5,779 Genes (RNA) :: 63 rRNAs :: 4 (5S) complete rRNAs :: 4 (5S) tRNAs :: 55 ncRNAs :: 4 Pseudo Genes (total) :: 61 Pseudo Genes (ambiguous residues) :: 12 of 61 Pseudo Genes (frameshifted) :: 22 of 61 Pseudo Genes (incomplete) :: 18 of 61 Pseudo Genes (internal stop) :: 13 of 61 Pseudo Genes (multiple problems) :: 4 of 61 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="PGN5" /db_xref="taxon:287" /country="USA: WV, Huntington" /collection_date="21-Nov-2017" /collected_by="Progenesis Technologies, LLC" /identified_by="Progenesis Technologies, LLC" /note="genotype: PAO1 toxA-, plcH-, phzM-, wapR-, aroA-" protein /gene="tssM" /locus_tag="PGN5_00435" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_003176940.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MKGFLNFFAR WVVPVLGLLA LSLIIWFLGP LLRLGNYEPL ASATSRWVLI VLLFLVWIGF 61 RVLRIVQARR NAAKVMQSLA EVSAPDAASV ATAEELATLK QRMDEALALL KRAKLGGSER 121 RNLYELPWYV IIGPPGSGKT TALMNSGLDF PLAAQMGAGA IRGVGGTRNC DWWFTDEAVL 181 LDTAGRYTTQ DSHAQVDKAA WLGFLDLLKT QRKRRPIDGA FIAISLSDLL LGSDAERAAH 241 AQAIRARIQE LYQQLGVRFP IYVMLTKFDL VPGFMEFFDS LNREERAQVW GMTFALDDGK 301 SAEGPLAVFD SEFALLEQRL TARLVERLQQ ERDPARRDLV YGFPQQFAAL RECLGEFLNG 361 VFKPNPYEER PLLRGLYFTS GTQEGSPIDR LIGSMAQSMN LDRQHLARQT GTGRSYFIER 421 LFREVAFGER GLVGTNPKVE RRRKWLTIGA LSATALVVLA VTAVWIASYR ANQSYIAAVD 481 QRVDPLARGI ESLSPAQRDV LAVLPQLNAV QNLAGDAPSW AEGYGLYQGD MLGEESASVY 541 RKLLIAVFAP RLVTRIEEQL RSGGSSDFLY EGLKAYLMLG SPDHYDADFI KAWISLDWER 601 NLPRDLSPEQ RQALHAHLDA LLERRPPSAR LDQDLVEDLR RQLQQLPVAQ RVYDRVKRQR 661 LPKDVPDFRI SDAAGRDAPL VFARKSGKPL TDPLSGFFTY RGYREVFLTA SLSQAGTIAE 721 EQWVLGRDLN DAGDAANLAL DVRRLYFQDY LRQWDDLLAD LTVVPITNVT QAADVLRILS 781 GPTSPFRKLL EAVARETDLQ KGDRLVAAQV KKAADGTVDK LKQRLGSLVG QEEEGAREQP 841 RQVDSDPISA HFAELNSLVS KGEGGNEPAP IDSLLEDMNA LYVQVSAMAG ASGDSLLGDA 901 KNQVAAAASR VALSAERQPP VVQGLVKNVV NSTTSSMMGS VRNQLNAAWI SDVVSVYRQS 961 LAGRYPIAAG SSRDATLEDF GHFFGAGGVM DSYFRQYLQP YVDTSASTWR WQPGAAQKLG 1021 INPGVLHTFQ RAAAIRDAFF RSGGMQPTVR FELKPVTMDA AISQFILDLD GQQLTYDHGP 1081 SRPVAMQWPS ANGLGVVRLT VTPPPSSGRS GLTLEGPWAW FRLLDQSDLE RGNSPDRFTL 1141 RLRIDGSSIA CELRASSAFN PFKSRVVSGF SLPERL //