LOCUS AZN84973.1 730 aa PRT BCT 18-DEC-2018 DEFINITION Pseudomonas aeruginosa TonB-dependent receptor protein. ACCESSION CP032540-457 PROTEIN_ID AZN84973.1 SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6264422) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Attenuated P. aeruginosa strain PAO1 with in-frame deletion of the following genes: toxA, plcH, phzM, and wapR JOURNAL Unpublished REFERENCE 2 (bases 1 to 6264422) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Direct Submission JOURNAL Submitted (25-SEP-2018) BioScience, Los Alamos National Laboratory, PO Box 1663 M888, Los Alamos, NM 87545, USA COMMENT Bacteria and source DNA available from Dr. Hongwei Yu (yuh@marshall.edu). Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 20-SEP-2018 Assembly Method :: Bowtie2 v. 2018-09-20 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 368.17x Sequencing Technology :: Illumina NextSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 09/26/2018 12:47:58 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,631 CDS (total) :: 5,568 Genes (coding) :: 5,507 CDS (coding) :: 5,507 Genes (RNA) :: 63 rRNAs :: 4 (5S) complete rRNAs :: 4 (5S) tRNAs :: 55 ncRNAs :: 4 Pseudo Genes (total) :: 61 Pseudo Genes (ambiguous residues) :: 13 of 61 Pseudo Genes (frameshifted) :: 21 of 61 Pseudo Genes (incomplete) :: 18 of 61 Pseudo Genes (internal stop) :: 13 of 61 Pseudo Genes (multiple problems) :: 4 of 61 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="PGN4" /isolation_source="derived from laboratory strain" /db_xref="taxon:287" /country="USA: WV, Huntington" /collection_date="13-Sep-2014" /collected_by="Progenesis Technologies, LLC" /identified_by="Progenesis Technologies, LLC" /note="genotype: PAO1 toxA-, plcH-, phzM-, wapR-" protein /locus_tag="PGN4_02290" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_249125.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MKKHSTARRV LALGLNLTLA GVPALLWADE EPTELPALTV SAGAAGETPP ALDLDDSAGG 61 GSRLGLSLRE TPGSVSVANR ASFERRGLRS TQDIANSLPG VNASAPPGFG GFVTYRGFSS 121 NQVNQLFNGI PVQYSSAMRP LDDWIVDRVE LVGGPSSFLN GAGAVGGSLD YISKLADRYG 181 DFMEGRVRYG SYDDSEVAFG FNQALGIGPE PKHFVRLDVS RSGGNGYVDR NSRESWNVAF 241 SLLSDLTPDL SHTLALEYQD EQEDSPYWGT PVLNPYAGEL KIDKSRRREN YNVADGRYEQ 301 RVRWLRSILE YRVSDSTRWR NTFYHYDAER DYRNLETYRY NADNSGVVRS NAFLQRHDQQ 361 LNGNRFELQH SQPLFGLASD WALGFDYSIN KQTRFPSTAS GPFGTVDPAS FEPGHFYDLP 421 GMRPGHRKDR SNEVRTSALF AENRLGLTDE LSLVTGLRYD HLDLDVRNHR VPDKDNPAHF 481 ERRWDVVTGR AGLVYQFTPH ANVYLQYSTA ADPPGGVLTS ASFGQVRDYD LSTGDQWELG 541 SKFDFLDGRG SATLAAYRIV RRDFSVADPN NPNLSVPVGQ QTSRGIEAAA SLRITPKLLA 601 EGNFAWVDAQ YDEFTENVGG VAVSRKGKTP PNVPERVGNL WLTYDFDPAW QGGVDARYVS 661 SVYANNANTW HVPSYTVYGT FLSYRLDERT RITGRVRNLT DEVYARFVQS TPLYYVGDPR 721 TFELSVQTRF //