LOCUS AZN84695.1 1015 aa PRT BCT 18-DEC-2018 DEFINITION Pseudomonas aeruginosa triclosan efflux RND transporter permease subunit TriC protein. ACCESSION CP032540-170 PROTEIN_ID AZN84695.1 SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6264422) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Attenuated P. aeruginosa strain PAO1 with in-frame deletion of the following genes: toxA, plcH, phzM, and wapR JOURNAL Unpublished REFERENCE 2 (bases 1 to 6264422) AUTHORS Valentine,M., Withers,R.W., Johnson,S.L., Niles,R. and Yu,H. TITLE Direct Submission JOURNAL Submitted (25-SEP-2018) BioScience, Los Alamos National Laboratory, PO Box 1663 M888, Los Alamos, NM 87545, USA COMMENT Bacteria and source DNA available from Dr. Hongwei Yu (yuh@marshall.edu). Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 20-SEP-2018 Assembly Method :: Bowtie2 v. 2018-09-20 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 368.17x Sequencing Technology :: Illumina NextSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 09/26/2018 12:47:58 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,631 CDS (total) :: 5,568 Genes (coding) :: 5,507 CDS (coding) :: 5,507 Genes (RNA) :: 63 rRNAs :: 4 (5S) complete rRNAs :: 4 (5S) tRNAs :: 55 ncRNAs :: 4 Pseudo Genes (total) :: 61 Pseudo Genes (ambiguous residues) :: 13 of 61 Pseudo Genes (frameshifted) :: 21 of 61 Pseudo Genes (incomplete) :: 18 of 61 Pseudo Genes (internal stop) :: 13 of 61 Pseudo Genes (multiple problems) :: 4 of 61 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="PGN4" /isolation_source="derived from laboratory strain" /db_xref="taxon:287" /country="USA: WV, Huntington" /collection_date="13-Sep-2014" /collected_by="Progenesis Technologies, LLC" /identified_by="Progenesis Technologies, LLC" /note="genotype: PAO1 toxA-, plcH-, phzM-, wapR-" protein /locus_tag="PGN4_00850" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_248848.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MKGGFNLSDW ALRHQSLVWY LMAVSLVMGV FSYLNLGREE DPSFAIKTMV IQTRWPGATV 61 DDTLEQVTDR IEKKLEELDS LDYVKSYTRP GESTVFVYLK DTTKAGDIPD IWYQVRKKIS 121 DIQGEFPQGI QGPGFNDEFG DVFGSVYAFT ADGLDFRQLR DYVEKVRLDI RSVKDLGKVQ 181 MIGAQNEVIY LNFSTRKLAA LGLDQRQVVQ SLQAQNAVTP SGVVEAGPER ISVRTSGNFR 241 SEKDLQAVNL RVNDRFYRLS DLASISRDFV DPPTSLFRYK GEPAIGLAVA MKEGGNILEF 301 GEALNARMQE ITGELPVGVG VHQVSNQAQV VKKAVGGFTR ALFEAVVIVL IVSFVSLGLR 361 AGLVVACSIP LVLAMVFVFM EYTDITMQRV SLGALIIALG LLVDDAMITV EMMITRLELG 421 DSLHDSATYA YTSTAFPMLT GTLVTVAGFV PIGLNASSAG EYTFTLFAVI AVALLLSWIV 481 AVLFAPVIAV HILPKTLKHK SEQKKGRIAE RFDSLLHLAM RRRWTTIFLT ALLFGVSLFL 541 MKFVQHQFFP SSDRPELLVD LNLPQNSSIH ETRAVMDRLE ATLKDDEDID HWSAYVGEGA 601 IRFYLPLDQQ LQNNFYGQLV IVTKDLEARE RVAARLRDRL RKDYVGISTY VQPLEMGPPV 661 GRPIQYRVSG PQIDKVREYA MGLAGVLDGN PNIGDIVYDW NEPGKMLKID IAQDKARQLG 721 LSSEDVAQIM NSVVTGSAVT QVRDDIYLVN VIGRAEDSER GSLETLESLQ IVTPSGTSIP 781 LKAFAKVSYE LEQPLVWRRD RKPTITVKAS LRGEIQPTDL VARLAPEVKR FADGLPANYR 841 IEVGGTVEES GKAEGPIAKV VPLMLFLMAT FLMIQLQSVQ KLFLVASVAP LGLIGVVAAL 901 LPTGTPMGFV AILGILALIG IIIRNSVILV TQIDAFEKDG KTPWEAVLEA THHRTRPILL 961 TAAAASLGMI PIAREVFWGP MAYAMIGGIV AATLLTLIFL PALYVAWYRI PEPGR //