LOCUS AWM35447.1 424 aa PRT BCT 23-MAY-2018 DEFINITION Hymenobacter nivis pseudouridylate synthase protein. ACCESSION CP029145-3055 PROTEIN_ID AWM35447.1 SOURCE Hymenobacter nivis ORGANISM Hymenobacter nivis Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter. REFERENCE 1 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Complete genome of Antarctic heterotrophic bacterium Hymenobacter nivis JOURNAL Unpublished REFERENCE 2 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido 060-0819, Japan COMMENT Bacteria and source DNA available from DSM 101755. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. SMRT Analysis v2.3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/26/2018 12:58:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,451 CDS (total) :: 4,396 Genes (coding) :: 4,252 CDS (coding) :: 4,252 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 3 Pseudo Genes (total) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 51 of 144 Pseudo Genes (incomplete) :: 71 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 24 of 144 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Hymenobacter nivis" /mol_type="genomic DNA" /strain="NBRC 111535" /isolation_source="Red snow" /culture_collection="DSM:101755" /culture_collection="NBRC:111535" /type_material="type strain of Hymenobacter nivis" /db_xref="taxon:1850093" /country="Antarctica: Yatude Valley" /collection_date="2006" protein /locus_tag="DDQ68_15465" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_018476407.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MRAARPFEAN PPQPREERGD DRSGRNDRPD RSDRNVGGDR DGSRDRGFGG ARGGEGGFER 61 KFTPGAFGRR DGAPGAPRIN GERPGGFEKR SFGGERDAVR VGSARPDGDE RPALGKFAQR 121 REDLKAQERS VRRSGTGYGT AIQTNRADKP GFGERPGEAP DYKNLKHYDA DPNRGNKRRR 181 DQENQDFGTD ELRLNRYIAN AGICSRREAD ALIASGEIRV NGEVVTEMGY KVQPTDTVQY 241 GKTNLNREKS VYVLLNKPKD FLTTTDDPEG RRTVMELVAN ASKERIFPVG RLDRNTTGLL 301 LFTNDGEVAQ RLSHPSHKNK KIYQVELSTP LTEDDLRKIG EGIELEDGKA EVDDVAVVAG 361 NPHFVGIEIH IGRNRIVRRI FEHLGYDVVA LDRVQYAGLT KKELPRGKWR FLSEQEVIRL 421 KYFM //