LOCUS AWM35417.1 734 aa PRT BCT 23-MAY-2018 DEFINITION Hymenobacter nivis radical SAM protein protein. ACCESSION CP029145-2630 PROTEIN_ID AWM35417.1 SOURCE Hymenobacter nivis ORGANISM Hymenobacter nivis Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter. REFERENCE 1 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Complete genome of Antarctic heterotrophic bacterium Hymenobacter nivis JOURNAL Unpublished REFERENCE 2 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido 060-0819, Japan COMMENT Bacteria and source DNA available from DSM 101755. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. SMRT Analysis v2.3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/26/2018 12:58:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,451 CDS (total) :: 4,396 Genes (coding) :: 4,252 CDS (coding) :: 4,252 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 3 Pseudo Genes (total) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 51 of 144 Pseudo Genes (incomplete) :: 71 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 24 of 144 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Hymenobacter nivis" /mol_type="genomic DNA" /strain="NBRC 111535" /isolation_source="Red snow" /culture_collection="DSM:101755" /culture_collection="NBRC:111535" /type_material="type strain of Hymenobacter nivis" /db_xref="taxon:1850093" /country="Antarctica: Yatude Valley" /collection_date="2006" protein /locus_tag="DDQ68_13290" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_018476802.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MATVSLAAPK ILLITPPLTQ LNTPYPATAY IKGFLKGRGY DVAQADLGLA LVLRLFSVDG 61 LKRVFAEIEA GDFSLSDNAK RMLRLQNRYL TTIAPVVRFL QNKDLTIAPR ICHGRFLPEA 121 SRFDNVADLE TAFGTMGLTD QARHLATLYL EDLADLIKET VGPHFGFSRY AEKLALSATS 181 FEPLHQALQA SANLLDTLLL EELDALLART QPDVVGFTVP FPGNLYGALR LAQHIKQTRP 241 ETRTIMGGGY PNTELRTIQE PRFFDYIDHL TLDDGEGPWL RLFDFWAGKI PQSELQRTFL 301 RDDAGQIQYV NHPHPDVPHP EVGTPDYSDL PLTDYLSVLE VLNPMHRLWS DGRWNKLTVA 361 HGCYWKRCSF CDVTLDYISR YETAPATLLV DRIEQVIAQT GQTGFHFVDE AAPPLALRDL 421 AVELLRRRVA ITWWGNIRFE KTFSPDLCRL LAASGCIAIS GGLEVASDRL LALMEKGVTI 481 GQVARVTEGF TQAGIMVHAY LMYGFPTQTA QETVDSLEVV RQLFAAGVVQ SGYWHRFSMT 541 AHSPVGKNPA KYQVAAVGPE PAGFAWNDLW HDDPLGTDHE AFGPGLAKSL YNYLHGVALN 601 EPLSFWFDFK TPKTTTPRQL VAQALQAPEK PDFAKQNQRL FWLGNAPELH VEAGKKGARA 661 IITCYEQAED FEVKAPEAAG RWLYELLVKL THDYDTKVLL KEAATTFPAA AGPFEAFLIS 721 PAWQLLREKG LLLL //