LOCUS AWM35402.1 905 aa PRT BCT 23-MAY-2018 DEFINITION Hymenobacter nivis ATP-dependent helicase HrpB protein. ACCESSION CP029145-2399 PROTEIN_ID AWM35402.1 SOURCE Hymenobacter nivis ORGANISM Hymenobacter nivis Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter. REFERENCE 1 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Complete genome of Antarctic heterotrophic bacterium Hymenobacter nivis JOURNAL Unpublished REFERENCE 2 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido 060-0819, Japan COMMENT Bacteria and source DNA available from DSM 101755. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. SMRT Analysis v2.3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/26/2018 12:58:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,451 CDS (total) :: 4,396 Genes (coding) :: 4,252 CDS (coding) :: 4,252 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 3 Pseudo Genes (total) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 51 of 144 Pseudo Genes (incomplete) :: 71 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 24 of 144 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Hymenobacter nivis" /mol_type="genomic DNA" /strain="NBRC 111535" /isolation_source="Red snow" /culture_collection="DSM:101755" /culture_collection="NBRC:111535" /type_material="type strain of Hymenobacter nivis" /db_xref="taxon:1850093" /country="Antarctica: Yatude Valley" /collection_date="2006" protein /gene="hrpB" /locus_tag="DDQ68_12115" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_019007304.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MPDLPIIAAL PALRDALAAH ARVVLEAPPG AGKTTVVPLA LLAAEWRGPQ DKILVLEPRQ 61 LAVRGAAARL AQLLGEPVGR TIGYRVRLDS KVSQDTRVEV ITEGILTRML QDDPALEGVA 121 CVVFDEFHER SLNADLGLAL ALDAQAVLRP ELRILIMSAT LEAQRLGQWL PAPVVSSAGF 181 LFPIDTHYLD PRRAAALPNR PGERLATLVP AQVRAALGAH PVGDVLVFLP GVADLQRVAR 241 ALDSLPDAID LHLLHGELPL DVQDAALRPA RAGRRKVILA TSIAETSLTI EGVRVVVDGG 301 FARVPRFVPR TGFTTLETVP VARAAADQRR GRAGRLAPGT CYRLWTEAEH HQLPLHRAPE 361 IQAADLSALA LELALWGTAN PADLRWLDAP PAAAYAQAQE LLVRLGAISS AQLSANSEQL 421 VGADNQPKPA SATVNSSLTT INCPFKPTAH GRQLARLGLP PRLGHLVVRG QELGQGPAAT 481 ALAALLAERD LLRWATPNDP RPLPPDLRLR LEALASGRAP LPGLALHPAT LQRVRDVARH 541 LQSRQGPKGH PLIHSFTHSP IGLLTALAYP DRVAQRETDG RLRLATGQRV ELRTEDVDPQ 601 AEFFAVAHLA GTAATPRATL AAPVSREELE TAFAGQITTT DEVRYDPATQ RVTGRRVRRL 661 GALRLAETVI GQPDAALVAG ALLAYLQEAG LSKLNWTPGA RQLQQRLEFL RYQFPEPAAA 721 GGEAFTTAQA PSTKHQAPPW PASDEATLLR ELPQWLGPHL AGFKSLDQVQ RLDLTEPLLA 781 RLPGGWAQRQ ALDRLAPAAL EVPSGSHVTL DYAEPTAPVL AVKLQELFGL TETPTVAGGR 841 VPLLLHLLSP GGRPAQVTRD LRSFWEKGYF DVRKDLKGRY PRHPWPDKPM EHIPTKLTKR 901 RLDNL //