LOCUS AWM35255.1 1121 aa PRT BCT 23-MAY-2018 DEFINITION Hymenobacter nivis peptidase S41 protein. ACCESSION CP029145-140 PROTEIN_ID AWM35255.1 SOURCE Hymenobacter nivis ORGANISM Hymenobacter nivis Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter. REFERENCE 1 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Complete genome of Antarctic heterotrophic bacterium Hymenobacter nivis JOURNAL Unpublished REFERENCE 2 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido 060-0819, Japan COMMENT Bacteria and source DNA available from DSM 101755. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. SMRT Analysis v2.3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/26/2018 12:58:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,451 CDS (total) :: 4,396 Genes (coding) :: 4,252 CDS (coding) :: 4,252 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 3 Pseudo Genes (total) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 51 of 144 Pseudo Genes (incomplete) :: 71 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 24 of 144 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Hymenobacter nivis" /mol_type="genomic DNA" /strain="NBRC 111535" /isolation_source="Red snow" /culture_collection="DSM:101755" /culture_collection="NBRC:111535" /type_material="type strain of Hymenobacter nivis" /db_xref="taxon:1850093" /country="Antarctica: Yatude Valley" /collection_date="2006" protein /locus_tag="DDQ68_00720" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_020716408.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MLALPPLGAP AAPAPAPVPY FSEPAVSPDR QELAFVSGGD IWTVPVAGGE ARLLVAHPAT 61 ESRPLYSPDG RSVAFVSTRT GNGDVYVLAL ETGELRRLTF DDAPDQLDNW SADGKWLYYS 121 STSHDIAGMN DLYRLPAAGG TPTPVSADRY VNEFYAAPSP DGRRVAFAAR GIAASQWWRH 181 GHSHLDESEI WLRREGPGAP TYEALTPGGA KQLWPMWGAG GQQLYYVSDR NGPENIWVLN 241 PAGGPAAART VTNFTDGRVL WPSISYDGKL IAFERNFQLW TLDPTTGQAR AVPVRRRGAP 301 AGPATERLRF TDRWQELALS PDGTKVAFVA HGEVFAASAA DGGEATRLSA TPTAESDVVW 361 APNSRRVVYA SERDGPAHFY SYDFGTDKET RLTNAARADA FPCFSPDGKQ LAFERDAREL 421 RVLDLATGQE RLVATGQFGR PPLSAERPLV WAPDGKWLAF MSGGTRSFTN VSVVPAAGGK 481 AQAVSFLGNG NSNSLSWSPD GKYLLFDTGQ RTEDAQLARV DLQPRTPRFR EDQFRDLFRE 541 QPAPSPGLPG RNTDPVIKPA SPKRPATLPG VDSAGAKGGA GALAGGRSGR AGAPVSIVFA 601 DIRRRLSLLP VGVNVGSHTI SPDGKWLLLT ASAAGQSNLY VFPLDELSKE PAVVRQLTST 661 TGAKRDAQFA PNSKEIYYLD QGVIKVVPLE AAKGPAPRTV AVTAEMDVDF EQEKMAVFDE 721 AWTRLRDFFN DSTFDGVDWA AQRAQFAPLV AGARTPEEAR RLTNLMIGEL NASHSGMNPA 781 PATGGAVPPA TGRLGLRFDA AEYEQSGRLR IVAVLPLGAG ALAGLRPGDE LLAVDGQAIG 841 PRTNLDELLQ YKVGRRVTLR VRSATAATAA DLQPAAVTKS KKNRRAAPAG APATTRDVVV 901 RPLSRDTEKA LDYRQWVEER RAYVAKASGG RLGYVHMFDM SAGALAQLYL DLDTENLGRD 961 GVVVDVRNNN GGFVNVYAID VLARRSYLTM SSRSRPQPVL ARGALGQRAL EMPTVLVTNQ 1021 HSLSDAEDFS EGYRAGQLGK IVGEPTGGWI IFTSNVSLLD GSSLRLPSST IRAVRDGKVM 1081 EMNPRPVDVP VSNPVGASYQ NQDAQLDTAV RELLGQLPAK R //