LOCUS AWM35135.1 1047 aa PRT BCT 23-MAY-2018 DEFINITION Hymenobacter nivis hypothetical protein protein. ACCESSION CP029145-4272 PROTEIN_ID AWM35135.1 SOURCE Hymenobacter nivis ORGANISM Hymenobacter nivis Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter. REFERENCE 1 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Complete genome of Antarctic heterotrophic bacterium Hymenobacter nivis JOURNAL Unpublished REFERENCE 2 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido 060-0819, Japan COMMENT Bacteria and source DNA available from DSM 101755. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. SMRT Analysis v2.3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/26/2018 12:58:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,451 CDS (total) :: 4,396 Genes (coding) :: 4,252 CDS (coding) :: 4,252 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 3 Pseudo Genes (total) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 51 of 144 Pseudo Genes (incomplete) :: 71 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 24 of 144 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Hymenobacter nivis" /mol_type="genomic DNA" /strain="NBRC 111535" /isolation_source="Red snow" /culture_collection="DSM:101755" /culture_collection="NBRC:111535" /type_material="type strain of Hymenobacter nivis" /db_xref="taxon:1850093" /country="Antarctica: Yatude Valley" /collection_date="2006" protein /locus_tag="DDQ68_21630" /inference="COORDINATES: protein motif:HMM:TIGR04056" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MKRKRLFFLW LLLPLLALAT RGLAQTGALT GRVLDPKGGP AIGATVMVKG TTLGASVGPD 61 GNFTISAVPN GPHTLLVSSI GYTAKQVPVT VPQAQPLSVS LAENAASLED VVVVGYGTQK 121 REDVTGAVAT VDVRAVRDLP VVSVDQKLAG QVAGVQVSNV TGTPGGGTSI KVRGSGSIGA 181 GDQPLFVIDG FPIASSFGQV DNPLNLLNPD DIETITVLKD ASSTAIYGSR GANGVVVITT 241 KRGKAGATNL DVSAYTGFQQ VPNKKRPPML NGQEFAQYRR DIITDDFAAR GVAVTDADIP 301 VEFRNSGQYG AGTNWYNEIL HTAPQSSLNA TLTKGTEELR TALSLGYLNQ EGTVRYTGYK 361 RYTARLSVEG KVGQKIRLGL NLAPTYGIQQ GNDFENSFVD VLARSLWLSP LVPALDANGN 421 RTPFVASPGM FTGPNPLNSL EFAGTTRKTL QGLGGTFAEY EIVPGLRLRY SININYANNT 481 AFTFNPASVG GIFAPPPVVP NSTSTSYTRF NWLSETLLSY DKKFGTDHVI SAVAGYSAQK 541 EHFESQNLFA NNYPGDDVRT INAAALLPNF GADVQEWALI SYLARVNYAY KDRYLLTGTV 601 RTDGSSRFGS QNRYGTFPSV AAGWNVINED FMHQLPTLSN LKVRASYGLT GNFNIGNYTS 661 IAGVASGYGY IGSGIDAGGS ANTAFGGQLA PGRALVSLPN PNLTWEKSTQ LDLGLDLGMW 721 DNRLAFTVDF YRRITNGILL DNQLPLSSGY SNATINSGKV LNRGLELALV TRNLTGAFTW 781 GTNLNIAFNH NEVLALNQDN APIYSGRSGE GNPTHITQVG HPIGEFFGYT VDGVYTNAAD 841 FAASPKHITS VLGSIKYHDV DGNGVIEAVK DFSVIGHAQP KYLWGVTNNF GYKGFDLSVI 901 ITGSQGGQIL KTANQYLLNI DGIFNVDRKI LNRWRSPENP GDGRTPTTNG ARVIYRDVNS 961 DWVEDGSFAR IQNVTLGYRL PAALLTRTGF VRGVRLYASA QNLATFTKYS GANPEVSRNN 1021 SSVLTPGEDF LNYPLARTII FGTNLSF //