LOCUS       AWM35014.1               867 aa    PRT              BCT 23-MAY-2018
DEFINITION  Hymenobacter nivis Clp protease ClpC protein.
ACCESSION   CP029145-4136
PROTEIN_ID  AWM35014.1
SOURCE      Hymenobacter nivis
  ORGANISM  Hymenobacter nivis
            Bacteria; Bacteroidota; Cytophagia; Cytophagales;
            Hymenobacteraceae; Hymenobacter.
REFERENCE   1  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Complete genome of Antarctic heterotrophic bacterium Hymenobacter
            nivis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-APR-2018) Institute of Low Temperature Science,
            Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido
            060-0819, Japan
COMMENT     Bacteria and source DNA available from DSM 101755.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. SMRT Analysis v2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/26/2018 12:58:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,451
            CDS (total)                       :: 4,396
            Genes (coding)                    :: 4,252
            CDS (coding)                      :: 4,252
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 51 of 144
            Pseudo Genes (incomplete)         :: 71 of 144
            Pseudo Genes (internal stop)      :: 48 of 144
            Pseudo Genes (multiple problems)  :: 24 of 144
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Hymenobacter nivis"
                     /mol_type="genomic DNA"
                     /strain="NBRC 111535"
                     /isolation_source="Red snow"
                     /culture_collection="DSM:101755"
                     /culture_collection="NBRC:111535"
                     /type_material="type strain of Hymenobacter nivis"
                     /db_xref="taxon:1850093"
                     /country="Antarctica: Yatude Valley"
                     /collection_date="2006"
     protein         /locus_tag="DDQ68_20935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018126898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MEAKFSNRVK EVISLSREEA IRLGHDYIGT EHLLLGMIRE AEGTALGLLR KLGVALDELK
       61 FSLEQATRNT ATQGNSITGS IPLTKQTEKV LKITYLEAKI FKSEVIGTEH LLLSILRDED
      121 NISSQILSKF NVNYETVRDS LDYHGNAAPA AKAPDTDDDD NDRLFGGQQG RGQGAGNAPG
      181 GAKKVGEKSR TPVLDNFGRD LTKMAEDDKL DPIVGREKEI ERVAQILSRR KKNNPILIGE
      241 PGVGKTAIAE GLALRIIQKK VSRVLFNKRV VTLDLASLVA GTKYRGQFEE RMKAVMNELE
      301 KSPDVILFID ELHTIVGAGG ASGSLDASNM FKPALARGEI QCIGATTLDE YRQYIEKDGA
      361 LARRFQMVMV DPTTPEETIE ILHNIKDKYQ DHHHVVYTDK AIEQCVMLSD RYMSDRFLPD
      421 KAIDILDEAG ARVHINNIVV PEDILTLEEQ IENIKGEKNR VVKSQKYEEA AKLRDTEKKL
      481 LDQLETAKKG WEEETKKKRY TVKEENVAEV IAMMTGIPVS RVAQNESQKL LNMNEELQGK
      541 VIGQEKAIKQ LVKAIQRTRV GLKDPKKPIG SFVFLGPTGV GKTELAKVLA TYLFDKEDSL
      601 VRVDMSEYME KFSVSRLVGA PPGYVGYEEG GQLTEKIRRK PYSVILLDEI EKAHPDVYNL
      661 LLQVLDDGIL TDGLGRKVDF RNTIIIMTSN IGARDLQDFG AGIGFGTKAR QDNMDELTKG
      721 TITNALKKTF SPEFLNRLDD VIVFNSLDKK DIHKIIEISL RKLFTRVTSL GYQVELTEKA
      781 KDFVAEKGYD PKYGARPLNR AIQKYIEDPI AEEILKAQVL HGDIITADYE DGKDELNFSV
      841 SKSDQKPNLA SDERPAEAPE SPDTDKK
//