LOCUS AWM35014.1 867 aa PRT BCT 23-MAY-2018 DEFINITION Hymenobacter nivis Clp protease ClpC protein. ACCESSION CP029145-4136 PROTEIN_ID AWM35014.1 SOURCE Hymenobacter nivis ORGANISM Hymenobacter nivis Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter. REFERENCE 1 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Complete genome of Antarctic heterotrophic bacterium Hymenobacter nivis JOURNAL Unpublished REFERENCE 2 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido 060-0819, Japan COMMENT Bacteria and source DNA available from DSM 101755. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. SMRT Analysis v2.3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/26/2018 12:58:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,451 CDS (total) :: 4,396 Genes (coding) :: 4,252 CDS (coding) :: 4,252 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 3 Pseudo Genes (total) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 51 of 144 Pseudo Genes (incomplete) :: 71 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 24 of 144 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Hymenobacter nivis" /mol_type="genomic DNA" /strain="NBRC 111535" /isolation_source="Red snow" /culture_collection="DSM:101755" /culture_collection="NBRC:111535" /type_material="type strain of Hymenobacter nivis" /db_xref="taxon:1850093" /country="Antarctica: Yatude Valley" /collection_date="2006" protein /locus_tag="DDQ68_20935" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_018126898.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MEAKFSNRVK EVISLSREEA IRLGHDYIGT EHLLLGMIRE AEGTALGLLR KLGVALDELK 61 FSLEQATRNT ATQGNSITGS IPLTKQTEKV LKITYLEAKI FKSEVIGTEH LLLSILRDED 121 NISSQILSKF NVNYETVRDS LDYHGNAAPA AKAPDTDDDD NDRLFGGQQG RGQGAGNAPG 181 GAKKVGEKSR TPVLDNFGRD LTKMAEDDKL DPIVGREKEI ERVAQILSRR KKNNPILIGE 241 PGVGKTAIAE GLALRIIQKK VSRVLFNKRV VTLDLASLVA GTKYRGQFEE RMKAVMNELE 301 KSPDVILFID ELHTIVGAGG ASGSLDASNM FKPALARGEI QCIGATTLDE YRQYIEKDGA 361 LARRFQMVMV DPTTPEETIE ILHNIKDKYQ DHHHVVYTDK AIEQCVMLSD RYMSDRFLPD 421 KAIDILDEAG ARVHINNIVV PEDILTLEEQ IENIKGEKNR VVKSQKYEEA AKLRDTEKKL 481 LDQLETAKKG WEEETKKKRY TVKEENVAEV IAMMTGIPVS RVAQNESQKL LNMNEELQGK 541 VIGQEKAIKQ LVKAIQRTRV GLKDPKKPIG SFVFLGPTGV GKTELAKVLA TYLFDKEDSL 601 VRVDMSEYME KFSVSRLVGA PPGYVGYEEG GQLTEKIRRK PYSVILLDEI EKAHPDVYNL 661 LLQVLDDGIL TDGLGRKVDF RNTIIIMTSN IGARDLQDFG AGIGFGTKAR QDNMDELTKG 721 TITNALKKTF SPEFLNRLDD VIVFNSLDKK DIHKIIEISL RKLFTRVTSL GYQVELTEKA 781 KDFVAEKGYD PKYGARPLNR AIQKYIEDPI AEEILKAQVL HGDIITADYE DGKDELNFSV 841 SKSDQKPNLA SDERPAEAPE SPDTDKK //