LOCUS AWM34792.1 808 aa PRT BCT 23-MAY-2018 DEFINITION Hymenobacter nivis penicillin-binding protein 1C protein. ACCESSION CP029145-3877 PROTEIN_ID AWM34792.1 SOURCE Hymenobacter nivis ORGANISM Hymenobacter nivis Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter. REFERENCE 1 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Complete genome of Antarctic heterotrophic bacterium Hymenobacter nivis JOURNAL Unpublished REFERENCE 2 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido 060-0819, Japan COMMENT Bacteria and source DNA available from DSM 101755. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. SMRT Analysis v2.3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/26/2018 12:58:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,451 CDS (total) :: 4,396 Genes (coding) :: 4,252 CDS (coding) :: 4,252 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 3 Pseudo Genes (total) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 51 of 144 Pseudo Genes (incomplete) :: 71 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 24 of 144 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Hymenobacter nivis" /mol_type="genomic DNA" /strain="NBRC 111535" /isolation_source="Red snow" /culture_collection="DSM:101755" /culture_collection="NBRC:111535" /type_material="type strain of Hymenobacter nivis" /db_xref="taxon:1850093" /country="Antarctica: Yatude Valley" /collection_date="2006" protein /gene="pbpC" /locus_tag="DDQ68_19630" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_015813351.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MKTGQLRGWA SWGPWLRRAG LALLGLAVVA AGLDRLCPLP PAPQYSPLVT AADGSVLHAF 61 LNPTQKWRMK TELREITPAL QRAIIYKEDR YFQYHFGVNP VAVVLAAGRN LFGRGRTTGA 121 STITMQVARL LEPKARTFGN KTLEMLRAVQ LEAHYSKAEI LQLYLNLVPY GSNIEGVKSA 181 ALLYFQQPPD YLSLAQTVTL AVIPNQPRLL VLGRSNPQIL AKRNHWLRQM QRDHIFPAQD 241 IADALAEPLD AQRHGPPALA PHLARRLVAQ FPGQAIITST LRRGPQAKAE DLTRNYVRRL 301 RELGITQAAV LVVNNRTRAV EAYVGSSDFS DAASQGQVDG VRAVRSPGST LKPLLYGLAF 361 DRGLATPKMQ LPDVPTNFNG FRPENFDKNC QGEVTVERAL VCSLNIPAVR LLADLGVPAF 421 TDKLRQAGFR TVARAAPRLG LSTVLGGCGA TLEELTGLYA ALANGGQFGS LRFEIKNEEL 481 KIKNRALGNV RKQGQAVGPI SNSSFLIFNS AQLLSPAAAF LVTDILAQRT RPDLPLGYEN 541 SLRLPKIAWK TGTSYGRRDA WSLGYNRDYT IGVWVGNFSG QGSPALTGAD VATPLLFDLF 601 NALAYNSPNH WAVPPATLDF RLVCAESGLV PGEHCPHQIL DYYLPGLSSA RRCEHVKEVL 661 VSADGALSYC RACVPPSGYR RQLFANPLPE VLAFRAAQGL PAPRLPPHNP ACRLVRGADD 721 GTAAPLAITS PLPHTEYLLN RDEQQQLLLS CAAGPEVRQV FWYVNDQFLR AAGAAERVFF 781 RPPAGPVKVS CADDHGRNVD VQLLVAEQ //