LOCUS AWM34639.1 782 aa PRT BCT 23-MAY-2018 DEFINITION Hymenobacter nivis hypothetical protein protein. ACCESSION CP029145-3706 PROTEIN_ID AWM34639.1 SOURCE Hymenobacter nivis ORGANISM Hymenobacter nivis Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter. REFERENCE 1 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Complete genome of Antarctic heterotrophic bacterium Hymenobacter nivis JOURNAL Unpublished REFERENCE 2 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido 060-0819, Japan COMMENT Bacteria and source DNA available from DSM 101755. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. SMRT Analysis v2.3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/26/2018 12:58:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,451 CDS (total) :: 4,396 Genes (coding) :: 4,252 CDS (coding) :: 4,252 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 3 Pseudo Genes (total) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 51 of 144 Pseudo Genes (incomplete) :: 71 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 24 of 144 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Hymenobacter nivis" /mol_type="genomic DNA" /strain="NBRC 111535" /isolation_source="Red snow" /culture_collection="DSM:101755" /culture_collection="NBRC:111535" /type_material="type strain of Hymenobacter nivis" /db_xref="taxon:1850093" /country="Antarctica: Yatude Valley" /collection_date="2006" protein /locus_tag="DDQ68_18770" /inference="COORDINATES: ab initio prediction:GeneMarkS+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS+." /transl_table=11 BEGIN 1 MLVVLLLLAP LLGPRGARAQ NTAGYGDWQL HLPTNRPLHL ADAGNRVYVG TENAFYFIDK 61 TLNTTQTLSS RDGLSDVGVA ALVYDSVGHQ TVVVYRNNNV DLLGDNGQVR NLPDILRKSI 121 QSDRTIYQAV VSGRRAYLSA AFGVVVLNLD RVEVSDTYSA IGPAGTAVRV YATAVAHDTL 181 FAATSAGLQV ARMADNLLDY RSWAVYQPVP VVASGYEAYR QLATQGPHVY ATVDNGGGIY 241 VFRGAANAWQ PVAAPYTNRA RQLRSSLRGL LLAGDAYGVY RRDAAGTFQL LAGSAGSGDY 301 VTDAVYSARD GSYYVANYLA GVQRLRAGQA PETFAANGPA TGSAYSLLSD AHTGITDVFT 361 GGYTDRYLPF FRREGFYEYT VGQWININGA LPAVMYPNPF DVARGARTAD GTLYVASYGN 421 GLLEWKGPGQ FRTFTEGTSG SPLRRTIAAN DPSYISVRVT DLVPDATGGV WVANQHRQVG 481 VSGLFRFDPA AATWSAIPYF NGSQNLDRLA IDNLGQVWAS EARQGGDGLW VVDPNTSATR 541 KFSLATDPAT GSDVILPAIY DVVNDRAGAV WVTTAAGVAV LDDPSGALAG TSTFRLPVVQ 601 RGEGSRFPVL YSEVVKSVAV DGANRKWFGT DNGLWLFSAD GSEALLHFTT ANSPLPSNRI 661 NDVAVNDKTG EVWVATDSGV LAYRGGATVT EGKPSCAQVF PNPVRPDFAG LVGIGGLANN 721 ALVKITDVAG HLVYATTATG GTVTWNLTDP DGRRVRSGVY LVLTSDANGQ NGCVSKVAVL 781 SK //