LOCUS AWM34465.1 969 aa PRT BCT 23-MAY-2018 DEFINITION Hymenobacter nivis hypothetical protein protein. ACCESSION CP029145-3508 PROTEIN_ID AWM34465.1 SOURCE Hymenobacter nivis ORGANISM Hymenobacter nivis Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter. REFERENCE 1 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Complete genome of Antarctic heterotrophic bacterium Hymenobacter nivis JOURNAL Unpublished REFERENCE 2 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido 060-0819, Japan COMMENT Bacteria and source DNA available from DSM 101755. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. SMRT Analysis v2.3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/26/2018 12:58:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,451 CDS (total) :: 4,396 Genes (coding) :: 4,252 CDS (coding) :: 4,252 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 3 Pseudo Genes (total) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 51 of 144 Pseudo Genes (incomplete) :: 71 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 24 of 144 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Hymenobacter nivis" /mol_type="genomic DNA" /strain="NBRC 111535" /isolation_source="Red snow" /culture_collection="DSM:101755" /culture_collection="NBRC:111535" /type_material="type strain of Hymenobacter nivis" /db_xref="taxon:1850093" /country="Antarctica: Yatude Valley" /collection_date="2006" protein /locus_tag="DDQ68_17745" /inference="COORDINATES: ab initio prediction:GeneMarkS+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS+." /transl_table=11 BEGIN 1 MLGALGALLF AGAAGAQSLP VIAQNPPDLR WRELRTPHFQ VLYPAGLDAA AQRTAGRLEA 61 VHGPDGATLG VQARPLAVVL QNQTTVSNGF VTFLPRHAEF FTTPEQGQGL GTVDWLDGLV 121 VHEFRHVNQF DKARQGVGRV LGPLLGDGAL GVAAVGVPQW FFEGDAVGTE TALTRSGRGR 181 IPYFGLGLRT NLLSGRRYNY QKAVSGSLRD YVPDWYVLGY FMTSYLKTHR GPDAWARVLD 241 DYYRFPFYPF SFSNSLRRTT GLRVEDLYDS TMAELDSTWR AEQAARPAPM PVRELAGQAD 301 TRIFTQYQFP QYVTDSTVLA LKSGLDNIPQ LVLLGRHGRE RKLFTPGLIN IPEQLSVGGG 361 ALVWPEFRQQ PRWGQRVFSE LKILDLATGR VRAVGRGGRY AAAALSPDGR RLVAVRTDES 421 YHHALVVLDA RSGALIQTLP NPRNDFYQQP RWLPDGRRVV AVVLRAAGKT LEIIDPATGA 481 TQPLLPVANV NLTNPQPWGD YVLYNSPQSG VDNIYAVSLK NGLTYQVTNR PFGAYHAAVS 541 PDGRTLALHD YRATGARIVE LPLDPATWTA LGAPATADAP GPYAAALAAG EPSGPRIAAL 601 LASPDSSGPR YGVRRYRPLA HAFRIFGYGV VQSPAGNAVS VGVRSQDFLS TTQAFAGLSY 661 DQTERTFAGT GALSYQGRFP VLDVEASYGG RNSTRYFDRA APLDSLRPAR WQYARVLAGV 721 RVPLVLTRSK YLQALTLGAY YLHERVYNYP ATLRNRDETG PTTPLHALQT YLSYASQLKQ 781 SARDVAPRGG ATLLATYRTT PFGTALQASQ IGAQAAVYLP GLAPHHALRL RAGYQYQQQG 841 QYNFTAAISY PRAETSYLSF DRLAAASADY NLPLAFVHWS VGRVLYVQRL RADLFVDVAR 901 GSSLVTTVPV NGPPVRTPAT QDFRNGGADL LALFNVFHLR TPVEAGVRIA YSSYLQRVVV 961 QTLAFNVRL //