LOCUS       AWM34465.1               969 aa    PRT              BCT 23-MAY-2018
DEFINITION  Hymenobacter nivis hypothetical protein protein.
ACCESSION   CP029145-3508
PROTEIN_ID  AWM34465.1
SOURCE      Hymenobacter nivis
  ORGANISM  Hymenobacter nivis
            Bacteria; Bacteroidota; Cytophagia; Cytophagales;
            Hymenobacteraceae; Hymenobacter.
REFERENCE   1  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Complete genome of Antarctic heterotrophic bacterium Hymenobacter
            nivis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-APR-2018) Institute of Low Temperature Science,
            Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido
            060-0819, Japan
COMMENT     Bacteria and source DNA available from DSM 101755.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. SMRT Analysis v2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/26/2018 12:58:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,451
            CDS (total)                       :: 4,396
            Genes (coding)                    :: 4,252
            CDS (coding)                      :: 4,252
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 51 of 144
            Pseudo Genes (incomplete)         :: 71 of 144
            Pseudo Genes (internal stop)      :: 48 of 144
            Pseudo Genes (multiple problems)  :: 24 of 144
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Hymenobacter nivis"
                     /mol_type="genomic DNA"
                     /strain="NBRC 111535"
                     /isolation_source="Red snow"
                     /culture_collection="DSM:101755"
                     /culture_collection="NBRC:111535"
                     /type_material="type strain of Hymenobacter nivis"
                     /db_xref="taxon:1850093"
                     /country="Antarctica: Yatude Valley"
                     /collection_date="2006"
     protein         /locus_tag="DDQ68_17745"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /transl_table=11
BEGIN
        1 MLGALGALLF AGAAGAQSLP VIAQNPPDLR WRELRTPHFQ VLYPAGLDAA AQRTAGRLEA
       61 VHGPDGATLG VQARPLAVVL QNQTTVSNGF VTFLPRHAEF FTTPEQGQGL GTVDWLDGLV
      121 VHEFRHVNQF DKARQGVGRV LGPLLGDGAL GVAAVGVPQW FFEGDAVGTE TALTRSGRGR
      181 IPYFGLGLRT NLLSGRRYNY QKAVSGSLRD YVPDWYVLGY FMTSYLKTHR GPDAWARVLD
      241 DYYRFPFYPF SFSNSLRRTT GLRVEDLYDS TMAELDSTWR AEQAARPAPM PVRELAGQAD
      301 TRIFTQYQFP QYVTDSTVLA LKSGLDNIPQ LVLLGRHGRE RKLFTPGLIN IPEQLSVGGG
      361 ALVWPEFRQQ PRWGQRVFSE LKILDLATGR VRAVGRGGRY AAAALSPDGR RLVAVRTDES
      421 YHHALVVLDA RSGALIQTLP NPRNDFYQQP RWLPDGRRVV AVVLRAAGKT LEIIDPATGA
      481 TQPLLPVANV NLTNPQPWGD YVLYNSPQSG VDNIYAVSLK NGLTYQVTNR PFGAYHAAVS
      541 PDGRTLALHD YRATGARIVE LPLDPATWTA LGAPATADAP GPYAAALAAG EPSGPRIAAL
      601 LASPDSSGPR YGVRRYRPLA HAFRIFGYGV VQSPAGNAVS VGVRSQDFLS TTQAFAGLSY
      661 DQTERTFAGT GALSYQGRFP VLDVEASYGG RNSTRYFDRA APLDSLRPAR WQYARVLAGV
      721 RVPLVLTRSK YLQALTLGAY YLHERVYNYP ATLRNRDETG PTTPLHALQT YLSYASQLKQ
      781 SARDVAPRGG ATLLATYRTT PFGTALQASQ IGAQAAVYLP GLAPHHALRL RAGYQYQQQG
      841 QYNFTAAISY PRAETSYLSF DRLAAASADY NLPLAFVHWS VGRVLYVQRL RADLFVDVAR
      901 GSSLVTTVPV NGPPVRTPAT QDFRNGGADL LALFNVFHLR TPVEAGVRIA YSSYLQRVVV
      961 QTLAFNVRL
//