LOCUS AWM34136.1 626 aa PRT BCT 23-MAY-2018 DEFINITION Hymenobacter nivis hypothetical protein protein. ACCESSION CP029145-3141 PROTEIN_ID AWM34136.1 SOURCE Hymenobacter nivis ORGANISM Hymenobacter nivis Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter. REFERENCE 1 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Complete genome of Antarctic heterotrophic bacterium Hymenobacter nivis JOURNAL Unpublished REFERENCE 2 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido 060-0819, Japan COMMENT Bacteria and source DNA available from DSM 101755. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. SMRT Analysis v2.3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/26/2018 12:58:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,451 CDS (total) :: 4,396 Genes (coding) :: 4,252 CDS (coding) :: 4,252 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 3 Pseudo Genes (total) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 51 of 144 Pseudo Genes (incomplete) :: 71 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 24 of 144 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Hymenobacter nivis" /mol_type="genomic DNA" /strain="NBRC 111535" /isolation_source="Red snow" /culture_collection="DSM:101755" /culture_collection="NBRC:111535" /type_material="type strain of Hymenobacter nivis" /db_xref="taxon:1850093" /country="Antarctica: Yatude Valley" /collection_date="2006" protein /locus_tag="DDQ68_15895" /inference="COORDINATES: protein motif:HMM:PF01103.21" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MYVRFFLRFG WLLGLALRLG APAAHAQTPN LDPAAPNQPG LASPPLPPPA AVPSTAGAPK 61 RPVHPRVLRL DAAPADAALL RRYKPKASVP DSLSALRELR ELVLALQGES YLTASADEIK 121 WGPDTVRARI FVGEPFRWAY LRNGNLGDGL LTRAGYRERF FRQAPFRPGE WAQLQERVLT 181 EAENQGYPFA TVGLDSVRLD GHSIAGRVVL KRGRAIVFDS IQIVGATKTR KQFLTKYLQI 241 FPGQPYSQQR VQAAAQLLRQ LPYLKVRAEP EVRFARGRAR VYLLLDDRPS NQFDAIVGVL 301 PGAGTGQGVQ FTGDVTINLR NLKGGGKQVG LQFRKVDALS QLLDIQYVHP NFFGTPLELA 361 GSFNLYKQTD AFLTVRPRLQ VTYPSARAGR VTFFVEQRNS RLFTDSAASR RLTILPENID 421 SQYTSYGLSY AWNTLDDLFF PHRGYLLNGQ AAVGTKIITR NPDLRSDLYD SLALRSTQTT 481 LALRAERYAP VGRAGVVLLR VRGESLANQR LFLNEMYRLG GLNSLRGFNE NQFYASSYAV 541 ATAEYRQFIG AESYVFLFAD QAYFRRGAVA SQAAVTDQPT GLGAGLSFRT AAGLFQFVYS 601 VGQSSSANQR FALGNSKIHF GITNRF //