LOCUS AWM33964.1 491 aa PRT BCT 23-MAY-2018 DEFINITION Hymenobacter nivis proline--tRNA ligase protein. ACCESSION CP029145-2945 PROTEIN_ID AWM33964.1 SOURCE Hymenobacter nivis ORGANISM Hymenobacter nivis Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter. REFERENCE 1 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Complete genome of Antarctic heterotrophic bacterium Hymenobacter nivis JOURNAL Unpublished REFERENCE 2 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido 060-0819, Japan COMMENT Bacteria and source DNA available from DSM 101755. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. SMRT Analysis v2.3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/26/2018 12:58:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,451 CDS (total) :: 4,396 Genes (coding) :: 4,252 CDS (coding) :: 4,252 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 3 Pseudo Genes (total) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 51 of 144 Pseudo Genes (incomplete) :: 71 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 24 of 144 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Hymenobacter nivis" /mol_type="genomic DNA" /strain="NBRC 111535" /isolation_source="Red snow" /culture_collection="DSM:101755" /culture_collection="NBRC:111535" /type_material="type strain of Hymenobacter nivis" /db_xref="taxon:1850093" /country="Antarctica: Yatude Valley" /collection_date="2006" protein /locus_tag="DDQ68_14915" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002671130.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSKKLPTRAE DYSLWYNDLV KRAGLAENSA VRGCMVIKPY GYAIWEKMQR QLDDMFKRTG 61 HENAYFPIFI PKSLFEAEEK NAEGFAKECA VVTHYRLQAD PDRPGKLRVD PAAKLEEELV 121 VRPTSEAIIW STYKNWVQSY RDLPLLINQW ANVVRWEMRT RLFLRTAEFL WQEGHTAHAT 181 AEEAVAETRQ MLDVYAEFAE EHMALPVIKG VKTANERFAG AEDTYCIEAL MQDGRALQAG 241 TSHFLGQNFA KAFDVQFATK DGAREYVWGT SWGVSTRLMG ALVMAHSDDE GLVLPPKLAP 301 IQVVIVPIYK TGELDALLER IRPIQQGLIA RGISVKVDAR DTERPGFKFA EWELKGVPVR 361 LAVGARDLDA GTVEVARRDT KQKMTLPLAD IVAAVDQLLN DIQANIYQKA RTYRDQHMTR 421 VDSYDEFKQV LDEKGGFVLA HYDGTPETEE RIKEDTKATV RCLALAEPDE DGTCMVTGAP 481 SPRRAYFARA Y //