LOCUS       AWM33923.1               962 aa    PRT              BCT 23-MAY-2018
DEFINITION  Hymenobacter nivis DNA polymerase I protein.
ACCESSION   CP029145-2901
PROTEIN_ID  AWM33923.1
SOURCE      Hymenobacter nivis
  ORGANISM  Hymenobacter nivis
            Bacteria; Bacteroidota; Cytophagia; Cytophagales;
            Hymenobacteraceae; Hymenobacter.
REFERENCE   1  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Complete genome of Antarctic heterotrophic bacterium Hymenobacter
            nivis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-APR-2018) Institute of Low Temperature Science,
            Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido
            060-0819, Japan
COMMENT     Bacteria and source DNA available from DSM 101755.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. SMRT Analysis v2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/26/2018 12:58:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,451
            CDS (total)                       :: 4,396
            Genes (coding)                    :: 4,252
            CDS (coding)                      :: 4,252
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 51 of 144
            Pseudo Genes (incomplete)         :: 71 of 144
            Pseudo Genes (internal stop)      :: 48 of 144
            Pseudo Genes (multiple problems)  :: 24 of 144
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Hymenobacter nivis"
                     /mol_type="genomic DNA"
                     /strain="NBRC 111535"
                     /isolation_source="Red snow"
                     /culture_collection="DSM:101755"
                     /culture_collection="NBRC:111535"
                     /type_material="type strain of Hymenobacter nivis"
                     /db_xref="taxon:1850093"
                     /country="Antarctica: Yatude Valley"
                     /collection_date="2006"
     protein         /locus_tag="DDQ68_14675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019946477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MTDTAATAPK KLFLLDAFAL IYRSHFAFSK NPRINSKGMN TGAVLGFTNT LVEVLQKEKP
       61 THIGVCFDGP KKTFRHEQFA DYKAQRQAMP EDIGIALPYI KKIIEGFHIP ILMMDGFEAD
      121 DVIGTLAQRA EAQGFEVFMM TPDKDYCQLV TENIKIYKPA FMGNAAEILD VAHVLARFEI
      181 ERVEQVIDIL GLQGDASDNI PGIPGIGEKT AKTLIQKYGS VENLLAHVDE LKGKQQENVR
      241 NFAEQGLMSK ELATIHVNVP LDFEPDKLVL DAPNEAVLRE LFDELEFRQL ATRVLGGGPE
      301 RTPASVAKPG TTGARRPKPA AGGQASLFGN PGDEAVAIGA EYGETGQAGA PDGPRRRLED
      361 VPYQYHLMDT PALRQSLLHF LLRQMEVSFD TETTGLDTMT ARLVGLSFCY RPGEAYYVPV
      421 PADDLPAAQA IVDEFCPFFN SPDILKIGQN IKYDLSILRH YNVEVAGPLF DTMLAHYLIE
      481 PDMRHNMDVL AETYLHYAPV PITDLIGPKG KKQITMADIA PAQVKDYACE DADVTLQLKH
      541 VFEPMLKELG LLELLNTVEN PLVPVLSSIE YEGVRIDSVA MGEYSAELQG YVIELERQIF
      601 LEAGQEFNIG SPKQLGEVLF DKMQVGGGKI KKTKTGQYAT GEEILSQLAA ENPIAALILE
      661 YRQLSKLRST YVEALPQLVS VVDGRVHTSF NQAVTATGRL SSTNPNLQNI PIRTEKGREI
      721 RKAFVPRDDQ HLLLAADYSQ VELRIMADFS GDATMIEAFR LGQDVHSSTA SKVFRVPLSE
      781 VDAEMRRKAK TVNFGIIYGI SAFGLAQRIG ISRKEAADII DTYFQEFPSV KQFMDDSINR
      841 ARELEYAETL LKRRRYLRDI NSRNATLRGY TERNAINAPI QGTAADIIKL AMINIYNWLR
      901 EEKLKTRMIL QVHDELVFDA VQEEVEYITP KIKELMTQAL LLPRGVPLEV EVGTGRNWLQ
      961 AH
//