LOCUS AWM33699.1 648 aa PRT BCT 23-MAY-2018 DEFINITION Hymenobacter nivis 1-deoxy-D-xylulose-5-phosphate synthase protein. ACCESSION CP029145-2659 PROTEIN_ID AWM33699.1 SOURCE Hymenobacter nivis ORGANISM Hymenobacter nivis Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter. REFERENCE 1 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Complete genome of Antarctic heterotrophic bacterium Hymenobacter nivis JOURNAL Unpublished REFERENCE 2 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido 060-0819, Japan COMMENT Bacteria and source DNA available from DSM 101755. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. SMRT Analysis v2.3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/26/2018 12:58:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,451 CDS (total) :: 4,396 Genes (coding) :: 4,252 CDS (coding) :: 4,252 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 3 Pseudo Genes (total) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 51 of 144 Pseudo Genes (incomplete) :: 71 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 24 of 144 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Hymenobacter nivis" /mol_type="genomic DNA" /strain="NBRC 111535" /isolation_source="Red snow" /culture_collection="DSM:101755" /culture_collection="NBRC:111535" /type_material="type strain of Hymenobacter nivis" /db_xref="taxon:1850093" /country="Antarctica: Yatude Valley" /collection_date="2006" protein /locus_tag="DDQ68_13440" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_019946276.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MTIEPGPLLA AINSPDDLKK LAPEQLVQVS TELREFIIDT VSIYGGHFGA SLGVVELTVA 61 LHYVFNTPYD QLVWDVGHQA YGHKILTGRR ERFPTNRRYG GMSGFPKISE SPYDAFGVGH 121 SSTSIGAALG MAVASDYKKD FDRQHIAVIG DGAMTAGMSF EALNQAGALN NNMIVVLNDN 181 CMSIDPNVGA LKEYLTDITT SRTYNKVRDE LWNVLGKLSK FGPNPQQIAR KVEAAMKATL 241 MKQSNLFEAL NFRYFGPVDG HDVQHLVAVL NDLKAIPGPK LLHCVTVKGK GYALAEKDQT 301 LWHAPGLFDK ITGEIYTKTP TTPQPPKYQD VFGHTLVELA EANDKIMGVT PAMPSGSSLN 361 LMMAAMPTRA FDVGIAEQHA VTFSAGLATQ GLVPFCNIYS SFMQRGYDQV IHDVALQNLH 421 VVFCLDRAGF AGADGPTHHG CYDLAYMRCI PNIVVSAPMN EQELRNLMYT AQLPENAGPF 481 SIRYPRGEGV MPEWRTPLQR VAVGTGRVVR EGEAGGVAIL TIGHIGNYAV KATAALAAEG 541 LDVGHYDLRF CKPLDEEMLR DVARRYGAIV TVEDGCLPGG FGSAVLEFLA DQGLHLPLRR 601 LGIPDRVVEH GTQDQLYKEC GFDAPGIAQA VREMAAKVTD AARESVLG //