LOCUS AWM33318.1 795 aa PRT BCT 23-MAY-2018 DEFINITION Hymenobacter nivis transglycosylase protein. ACCESSION CP029145-2239 PROTEIN_ID AWM33318.1 SOURCE Hymenobacter nivis ORGANISM Hymenobacter nivis Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter. REFERENCE 1 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Complete genome of Antarctic heterotrophic bacterium Hymenobacter nivis JOURNAL Unpublished REFERENCE 2 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido 060-0819, Japan COMMENT Bacteria and source DNA available from DSM 101755. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. SMRT Analysis v2.3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/26/2018 12:58:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,451 CDS (total) :: 4,396 Genes (coding) :: 4,252 CDS (coding) :: 4,252 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 3 Pseudo Genes (total) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 51 of 144 Pseudo Genes (incomplete) :: 71 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 24 of 144 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Hymenobacter nivis" /mol_type="genomic DNA" /strain="NBRC 111535" /isolation_source="Red snow" /culture_collection="DSM:101755" /culture_collection="NBRC:111535" /type_material="type strain of Hymenobacter nivis" /db_xref="taxon:1850093" /country="Antarctica: Yatude Valley" /collection_date="2006" protein /locus_tag="DDQ68_11310" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_019948553.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MAVPSPPIPS ASPARVPIPS GRWPRRLVRW AWALFGLSLV LFLVYPILVS TNFLFLFGKS 61 PSLAELESPK VEQASELFTS DGVLMGRYFR ENRSPVPLSK ISPVLIKALV ATEDVRFYEH 121 AGIDGPALLG ALAAAVRGEK RGGSTLTQQL AKNLYKTRRG ETRGGLGHVP GLSTLISKTK 181 EWLTAVELER RYTKQEILRM YLNTVEYGSN AYGIKVAAKT YFNTSPDSLS VVQAAMLVGV 241 LNNPTAYNPR FHPEAARRRR NVVLERMGQA GILKASEVGP LQAQPVALDY HVERHIDGPD 301 NYFRGAIGQL VTKWCDDHDL DLYRDGLRIY TTLDSRMQNH AEVALHERMK ALQSSFDNFW 361 RNRGQNPWVD EKGEEIPDFI NTQIKRTEVY KTLHNRYHGN QAQIEAALNL KRPMKVFTWK 421 HDDGDTTLVM SSLDSLAYYK HFLQAGMMTM DPYTGSIKAW VGGLDYRFFQ YDHVKQGRRQ 481 AGSTFKPFVY LTALDNGYSP CDRIRDQRVT IKYVENGKPM EWQPDNVTRE YTGLNMTLRH 541 AMARSVNSVT AQLTELVGWD KVAVYARKVG ITSPLLPVPS IGLGSAGDVS VYEMVNAYST 601 FMNTGFRSTP RLITRIEDRH GNVIQQFDPV QRRAISPETA WLMTYMLRGG MEEPGGTSQA 661 LWDYDLWHKD NQIGGKTGTT SNYSDGWYMG LTKDLVTGVW VGGEDRSIHF VGSQQGEGGR 721 TALPIFGKYM EKIYQDKSLG YDYGHFPAPT VKINKKYTCV SPSEPRRREA AVDTIAADNL 781 LERMNGAGGP PDSVR //