LOCUS AWM33287.1 855 aa PRT BCT 23-MAY-2018 DEFINITION Hymenobacter nivis hypothetical protein protein. ACCESSION CP029145-2204 PROTEIN_ID AWM33287.1 SOURCE Hymenobacter nivis ORGANISM Hymenobacter nivis Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter. REFERENCE 1 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Complete genome of Antarctic heterotrophic bacterium Hymenobacter nivis JOURNAL Unpublished REFERENCE 2 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido 060-0819, Japan COMMENT Bacteria and source DNA available from DSM 101755. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. SMRT Analysis v2.3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/26/2018 12:58:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,451 CDS (total) :: 4,396 Genes (coding) :: 4,252 CDS (coding) :: 4,252 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 3 Pseudo Genes (total) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 51 of 144 Pseudo Genes (incomplete) :: 71 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 24 of 144 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Hymenobacter nivis" /mol_type="genomic DNA" /strain="NBRC 111535" /isolation_source="Red snow" /culture_collection="DSM:101755" /culture_collection="NBRC:111535" /type_material="type strain of Hymenobacter nivis" /db_xref="taxon:1850093" /country="Antarctica: Yatude Valley" /collection_date="2006" protein /locus_tag="DDQ68_11135" /inference="COORDINATES: protein motif:HMM:PF05569.9" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MRALEQILSP AVLRALGWTL LHSLWQGALA AAVVAVALLV LRRRSAAVRY RVAAGALGAL 61 VLLSVGTFGY YYGAPETLAA PTYGAVELAQ TTAAPAAAVA VAADFVSSAT TAVAVPRPGW 121 LVMARFHFDQ NLPWLVLAWG LGLLVMSLRL LGGLLYVQRL RRHRTRPLPA VWQARLGALV 181 ARAGLRRPVA LLESGLVAGP LVVGHLRPLV LLPLGAVAGL PVACVEAILA HELAHVLRRD 241 YLVNLLQTVA ETVFFYHPAV WYLGQCLRAE RENCCDDLAT DLVGGDPLRL ARALTALAEW 301 SQTAVLAPVP RLALAATGGP GSLLSRVRRL VQGPPARPTR GESLAAVALL LGGLGLLGTG 361 VALAAPAALA PAGPRLHQLV PTAPVVAWQS VFSPADTAKR RAAMALPFFP ALPALPSFPA 421 LPALPPVPPA PPVASAPEAP EAPEVPVVPE VPEVPAAPDA PQPPRLRRLR SGQQGPGSTV 481 IIEKDKKGRL TQLIVDGQPV ETQGPGKKNK KNKKSQVEVI QLPMSGVWAI SGVPGNPEAT 541 LRALGMDPRV QTFGPEANLE QQNKMFKEQE KLFKQRDRMF QKQEQLSRQL GNYNLGTYNQ 601 QLNGLARITP NVNLDMNLDT DGIERDAVAS ARRSLRQSLQ NPNLSDDDRR ATEQALASLE 661 DNRSRRDSNQ AESNARRAES NARRAEANAR QAGVNALRAE ANGRQAEANA RRIEAEVRRR 721 EAQGQPGAPA DDVRERRREL QAQIRDAQRE LAVLQREEAT GGNAAGTARG PRVPQGPPAP 781 PAPASSDKVR DELRRAGLIG ATEKNFTFQL DDKGGRVNGR ALTPAQFDKY RRLFLPAATG 841 AGKSKSAISI SVDER //