LOCUS       AWM33192.1               826 aa    PRT              BCT 23-MAY-2018
DEFINITION  Hymenobacter nivis hypothetical protein protein.
ACCESSION   CP029145-2102
PROTEIN_ID  AWM33192.1
SOURCE      Hymenobacter nivis
  ORGANISM  Hymenobacter nivis
            Bacteria; Bacteroidota; Cytophagia; Cytophagales;
            Hymenobacteraceae; Hymenobacter.
REFERENCE   1  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Complete genome of Antarctic heterotrophic bacterium Hymenobacter
            nivis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-APR-2018) Institute of Low Temperature Science,
            Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido
            060-0819, Japan
COMMENT     Bacteria and source DNA available from DSM 101755.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. SMRT Analysis v2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/26/2018 12:58:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,451
            CDS (total)                       :: 4,396
            Genes (coding)                    :: 4,252
            CDS (coding)                      :: 4,252
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 51 of 144
            Pseudo Genes (incomplete)         :: 71 of 144
            Pseudo Genes (internal stop)      :: 48 of 144
            Pseudo Genes (multiple problems)  :: 24 of 144
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Hymenobacter nivis"
                     /mol_type="genomic DNA"
                     /strain="NBRC 111535"
                     /isolation_source="Red snow"
                     /culture_collection="DSM:101755"
                     /culture_collection="NBRC:111535"
                     /type_material="type strain of Hymenobacter nivis"
                     /db_xref="taxon:1850093"
                     /country="Antarctica: Yatude Valley"
                     /collection_date="2006"
     protein         /locus_tag="DDQ68_10625"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /transl_table=11
BEGIN
        1 MAKKAVHATF VRALDKAHTE EDVKNVVAKQ FDITYDTADR NDLYTPRVLF EFKFDKNFAS
       61 LRQRAAVLAQ ALYYMRRLKF GYTDRPIPGH ICLADRNEGL LFDAAALRDV YADEAHAYDW
      121 DLAPSSPDPR LTAALLLLPA VRDAHVYDLR QETEYEAWAA RLAGALASQA ALGLADKKVI
      181 TERNFEEVYH YWNNQFGESV RNGKKSSRYF MADIQEGRSL AQPGQGRVLF NLGTGAWVDK
      241 KILPRAYDYF WSLYEKVTNP DTMRALVAKI DRLSDEESRR REGEFYTPLS FAAKALDYLE
      301 RTLGPRWWAT GQYRLWDMAA GTGNLEYGLP TDALPFCYLS TLDQVDVDHC QGLFPGATIF
      361 QYDYLNDDIG NLFNTESLGY LDAWKLPKTL RDDLANPALK WIVLINPPFA TSQTAGTAAP
      421 GKKSKDLVSA TRVQKVMHRE GLGETSRELF AQFLFRIRRD FQGKTAHLGM FSKTKYLNAT
      481 NDHFLRERVF RYEFERGFVF SSANFAGTKG KFPVGFLLWN LGRERALDDQ IVELNVFNEQ
      541 VEKVGTKLFS TQHRDQFLSK WVPRPRTKRV FPPFSAAITV STRTTDVRDQ VAPGFLASLM
      601 CAGNDFQHQN NTALLSGPYA SAGALSVVPA NFERALVVHA VRRLPKATWL NDRDQFLAPA
      661 AEPLPADFVA GCVAWSLFSN SNQTAALAAV PYQGTTYSVP NHLYPWAKAE VRTWPLKDLD
      721 VQRTLTAADP DRHAAAWLLV HAAALPPAAQ ALLAAARPLY QFFYAHLPAL RTGHFRIGTW
      781 DAGWFQVRNA LADQNLAPDL LADVKRHHAA LGQWLLPQLA PLGFLP
//