LOCUS AWM33192.1 826 aa PRT BCT 23-MAY-2018 DEFINITION Hymenobacter nivis hypothetical protein protein. ACCESSION CP029145-2102 PROTEIN_ID AWM33192.1 SOURCE Hymenobacter nivis ORGANISM Hymenobacter nivis Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter. REFERENCE 1 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Complete genome of Antarctic heterotrophic bacterium Hymenobacter nivis JOURNAL Unpublished REFERENCE 2 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido 060-0819, Japan COMMENT Bacteria and source DNA available from DSM 101755. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. SMRT Analysis v2.3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/26/2018 12:58:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,451 CDS (total) :: 4,396 Genes (coding) :: 4,252 CDS (coding) :: 4,252 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 3 Pseudo Genes (total) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 51 of 144 Pseudo Genes (incomplete) :: 71 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 24 of 144 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Hymenobacter nivis" /mol_type="genomic DNA" /strain="NBRC 111535" /isolation_source="Red snow" /culture_collection="DSM:101755" /culture_collection="NBRC:111535" /type_material="type strain of Hymenobacter nivis" /db_xref="taxon:1850093" /country="Antarctica: Yatude Valley" /collection_date="2006" protein /locus_tag="DDQ68_10625" /inference="COORDINATES: ab initio prediction:GeneMarkS+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS+." /transl_table=11 BEGIN 1 MAKKAVHATF VRALDKAHTE EDVKNVVAKQ FDITYDTADR NDLYTPRVLF EFKFDKNFAS 61 LRQRAAVLAQ ALYYMRRLKF GYTDRPIPGH ICLADRNEGL LFDAAALRDV YADEAHAYDW 121 DLAPSSPDPR LTAALLLLPA VRDAHVYDLR QETEYEAWAA RLAGALASQA ALGLADKKVI 181 TERNFEEVYH YWNNQFGESV RNGKKSSRYF MADIQEGRSL AQPGQGRVLF NLGTGAWVDK 241 KILPRAYDYF WSLYEKVTNP DTMRALVAKI DRLSDEESRR REGEFYTPLS FAAKALDYLE 301 RTLGPRWWAT GQYRLWDMAA GTGNLEYGLP TDALPFCYLS TLDQVDVDHC QGLFPGATIF 361 QYDYLNDDIG NLFNTESLGY LDAWKLPKTL RDDLANPALK WIVLINPPFA TSQTAGTAAP 421 GKKSKDLVSA TRVQKVMHRE GLGETSRELF AQFLFRIRRD FQGKTAHLGM FSKTKYLNAT 481 NDHFLRERVF RYEFERGFVF SSANFAGTKG KFPVGFLLWN LGRERALDDQ IVELNVFNEQ 541 VEKVGTKLFS TQHRDQFLSK WVPRPRTKRV FPPFSAAITV STRTTDVRDQ VAPGFLASLM 601 CAGNDFQHQN NTALLSGPYA SAGALSVVPA NFERALVVHA VRRLPKATWL NDRDQFLAPA 661 AEPLPADFVA GCVAWSLFSN SNQTAALAAV PYQGTTYSVP NHLYPWAKAE VRTWPLKDLD 721 VQRTLTAADP DRHAAAWLLV HAAALPPAAQ ALLAAARPLY QFFYAHLPAL RTGHFRIGTW 781 DAGWFQVRNA LADQNLAPDL LADVKRHHAA LGQWLLPQLA PLGFLP //