LOCUS       AWM33191.1              1295 aa    PRT              BCT 23-MAY-2018
DEFINITION  Hymenobacter nivis hypothetical protein protein.
ACCESSION   CP029145-2101
PROTEIN_ID  AWM33191.1
SOURCE      Hymenobacter nivis
  ORGANISM  Hymenobacter nivis
            Bacteria; Bacteroidota; Cytophagia; Cytophagales;
            Hymenobacteraceae; Hymenobacter.
REFERENCE   1  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Complete genome of Antarctic heterotrophic bacterium Hymenobacter
            nivis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-APR-2018) Institute of Low Temperature Science,
            Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido
            060-0819, Japan
COMMENT     Bacteria and source DNA available from DSM 101755.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. SMRT Analysis v2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/26/2018 12:58:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,451
            CDS (total)                       :: 4,396
            Genes (coding)                    :: 4,252
            CDS (coding)                      :: 4,252
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 51 of 144
            Pseudo Genes (incomplete)         :: 71 of 144
            Pseudo Genes (internal stop)      :: 48 of 144
            Pseudo Genes (multiple problems)  :: 24 of 144
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Hymenobacter nivis"
                     /mol_type="genomic DNA"
                     /strain="NBRC 111535"
                     /isolation_source="Red snow"
                     /culture_collection="DSM:101755"
                     /culture_collection="NBRC:111535"
                     /type_material="type strain of Hymenobacter nivis"
                     /db_xref="taxon:1850093"
                     /country="Antarctica: Yatude Valley"
                     /collection_date="2006"
     protein         /locus_tag="DDQ68_10620"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /transl_table=11
BEGIN
        1 MAHLYRLRFP WLGLLVAVWA VLSALGARAQ EKPALPPGPG VPAAAPALGA PATAAPAVGA
       61 PRVAPTAVPP PSSRRCRYLR LAPGRDTTDF ALADTLTIVP ASVTAADGRA VPYDARTGRY
      121 RWVRSAPRDS AGPPRLDSVL LCYRVLPLRL EAARYRRPLR LMDSLDFRRG PIGYEDFSVK
      181 EQILNTPGIS KTGNLARGVS FGNTQNVFVN SALNLQLEGQ LTDGIHLTAA ISDQNVPFQP
      241 EGNTQQLQQF DKIYITLTSK QGSLTAGDVV LRNKPDYFLR YYKNIQGAAL EANFGPPLPG
      301 LVSGPAAQGV ANTVFLNGQA GQLPVAPGGA VPTLNPAGIA QPQLADPNRQ VPLAGATATA
      361 SGRTAKGLAW QSSTAVAGGV AKGKFASLEV APLENVQGPY RLVGPNGEQF IIVLANSERV
      421 YLDGRLQVRG YDADYTIDYN LAEVTFTPRH LITRNSRIKI DFEYSDLNYS RSLYALSHYQ
      481 QIGKLGIHAN YYQEADNPDN AANLELGPAD RLRLRAAGNV AAVDAPGADS AVFNRTIVQY
      541 HRAVVLPPGA LLPVAVFTYV GATSPIDSVR GVYTVRFTDL GQGNGDYVAS TRFVAANGRV
      601 YEYVAPVGGV RQGRYQPVRR LPTPQLKQLV SAGASYEVAR GATVFVDAAT SRLDRNRFSP
      661 ESDRGGAVHV GYVVQDRRLN LPGLRDYRVR SALDYEYTAP RFAPIDRYRD IEFDRNWSTA
      721 STVQGNAVGG VPREDNILNF SVGLAKNVNN NFSYRLSKRY RPGEVNGTQH WLDGAQKFGG
      781 LELRGSLFLL NSEAGRFRSS WARGEGTARF VGGALVPGYA YRFDKNRVAL PGGDSTSTVN
      841 YFDEHNVFVQ SRDSARTKFR LDYSYRRDQG PTADRRALAE RSAAQTWQGS LAARPGRTQD
      901 LRIVATYRSL AQRDSALSRT ALGKIDYNVG LFQNQVRSEL SYSVATGREL RRDYSYLAVP
      961 AGQGTHYWRD APPYDGIQQK NEFFEAQTAD AQYRTYIKVY LPTADYLIAF TNRLSYRLTT
     1021 AAPRGWREAG GWRAVAARFA TLSSVTVDRR TANPNLGQRL SPFGYGPQDD QLLAFNQLMR
     1081 NTVYFNRSNP IFGAEFTVQQ TQQKTLLTQG FDLRNLATQS LLVRRTLAQF FTGRLTLTRD
     1141 IREAQSDYLT TATTSRNFRL LNYIVQPEIS YQPSPALRLT GTYLRTTKRN VRDDAYFGTA
     1201 GVFDELGLEA RISQVSKRTV TAATRFTRVG FAGDPTSAVG IEILNALRAG ANFTWNLNLE
     1261 QRLSNGLNLT LAYDGRKASG LNVVHTGRMQ VAVLF
//