LOCUS AWM32710.1 872 aa PRT BCT 23-MAY-2018 DEFINITION Hymenobacter nivis glucosidase protein. ACCESSION CP029145-1564 PROTEIN_ID AWM32710.1 SOURCE Hymenobacter nivis ORGANISM Hymenobacter nivis Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter. REFERENCE 1 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Complete genome of Antarctic heterotrophic bacterium Hymenobacter nivis JOURNAL Unpublished REFERENCE 2 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido 060-0819, Japan COMMENT Bacteria and source DNA available from DSM 101755. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. SMRT Analysis v2.3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/26/2018 12:58:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,451 CDS (total) :: 4,396 Genes (coding) :: 4,252 CDS (coding) :: 4,252 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 3 Pseudo Genes (total) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 51 of 144 Pseudo Genes (incomplete) :: 71 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 24 of 144 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Hymenobacter nivis" /mol_type="genomic DNA" /strain="NBRC 111535" /isolation_source="Red snow" /culture_collection="DSM:101755" /culture_collection="NBRC:111535" /type_material="type strain of Hymenobacter nivis" /db_xref="taxon:1850093" /country="Antarctica: Yatude Valley" /collection_date="2006" protein /locus_tag="DDQ68_07895" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_020605680.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MTAEHERLRD VGPWRTFGPY LAERQWGTVR EDYSAAGEPW NFTTHDMARS YTYRWGEDGL 61 GGISDDQQLL CFAPAFWNGQ DPILKERLFG LSGPEGNHGE DVKELYYYLD NTPTHSYMRM 121 LYKYPQHAFP YDWLVQQNAK RTRDDPEFEL ADTAVFREDK YFDIFIEYAK AGPQDVLITI 181 TAHNRGPQAA PLHVLPTLWF RNTWAWGDDD YYPDLRATDD GCIAVEHRDL PGLALHADGA 241 PALLFCDNET NAPRLYRAAP RPGAKFFKDG LNECVVGGHA AAVNADRGGT KAAAHYVLTI 301 EAGESQTLRL RLGPNDLATP FADFDALVAQ RRQEADAFYG ALQCDLAGAD ARAVQRQALA 361 GMLWNKQFYD YDVRRWLAGD PTLPAPPASR LEGRNADWLH VRNHDIISMP DNWEYPWYAA 421 WDLAFHAVPL ALVDPEFAKS QLRLLCHDRY MHANGQLPAY EWQFGDVNPP VHAWATFRVF 481 KMDQKQCGGP GDVAFLETVF HRLLLNFTWW VNRKDTAGRN IFEGGFLGLD NIGVFDRSAP 541 MPPGVYIEQA DGTAWMALYA LNLMRMALEL AQTNPVYEDL AGKYFEHFLA IAQAMTGFGP 601 HDIDMWDEED EFYYDVLKSP QGRTPLKVRS MVGLVPLFAV EVLDDELLCN APQFLARMNW 661 ILANRPDLAG LVSRWQEPGK GDRHLLSLLR GHRLKALLRR MLDEAEFLSA HGVRALSKYH 721 LDHPYVFRTD GKSFTVDYEP SESTTSLYGG NSNWRGPVWF PVNYMLIEGL QRFHHYYGDD 781 FKVEFPTGSG QYSTLLAIAE QLTARLTGLF LRGENGQRPC FGADAQQQTD PHFKDYLLFH 841 EYFHGDTGQG LGASHQTGWT GLVAKLLQPR GK //