LOCUS AWM32643.1 832 aa PRT BCT 23-MAY-2018 DEFINITION Hymenobacter nivis DNA helicase RecQ protein. ACCESSION CP029145-1487 PROTEIN_ID AWM32643.1 SOURCE Hymenobacter nivis ORGANISM Hymenobacter nivis Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter. REFERENCE 1 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Complete genome of Antarctic heterotrophic bacterium Hymenobacter nivis JOURNAL Unpublished REFERENCE 2 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido 060-0819, Japan COMMENT Bacteria and source DNA available from DSM 101755. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. SMRT Analysis v2.3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/26/2018 12:58:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,451 CDS (total) :: 4,396 Genes (coding) :: 4,252 CDS (coding) :: 4,252 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 3 Pseudo Genes (total) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 51 of 144 Pseudo Genes (incomplete) :: 71 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 24 of 144 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Hymenobacter nivis" /mol_type="genomic DNA" /strain="NBRC 111535" /isolation_source="Red snow" /culture_collection="DSM:101755" /culture_collection="NBRC:111535" /type_material="type strain of Hymenobacter nivis" /db_xref="taxon:1850093" /country="Antarctica: Yatude Valley" /collection_date="2006" protein /gene="recQ" /locus_tag="DDQ68_07505" /inference="COORDINATES: protein motif:HMM:PF04480.10" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_017730255.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MHHIAEQAEY DADRIFTLTE LGYCELRFTN QQVLHQPPQV LATIQKYLLP TTRQRVVRLP 61 PSFLASRLEA NRGPAPWGAR EVPPNVMPDT LTAAAELLPA ARRALKRYYG YDNFRPMQAD 121 IIQSVLAGQD TVVLMPTGGG KSVCFQVPAV VSEGLCVVVS PLIALMKDQV EALKGNGIAA 181 AFINSSVGQN EANDIARAAV SGHLKLLYVS PEKLLSEGFM QFLTRVNISL FAIDEAHCIS 241 SWGHDFRPEY TKLGALRTQF PSTPIVALTA TADRLTKRDI ITQLNLHEPK VFLSSFDRPN 301 INLIVRPGQD RVGSVVDYIT RHPQDPGIIY CLSRKTCETI SQKLQQKGIK AAHYHAGLTP 361 NQRSAAQEAF LQDDVQVIVA TIAFGMGIDK SNVRWVMHYN LPKNIEGYYQ EIGRAGRDGA 421 PSTAILFYSF ADVMQMREMV TRDVPARQAQ LNTAKLERMQ QFAEAASCRR KILLHYFSET 481 LAHDCGNCDI CRNPPTTFDG TLLAQKALSA VARARERLSV TLLIDVLRGM RNQAVIAGGY 541 DQIKTYGAGA DLPYLDWYSY VHQMLNDGLF YIAYEEGYAL KITPRGYEVL KGELPLPLKK 601 FQPAEKAEKP TRASRKAATE AAATGSPEAR LFEHLRQLRK QLADEQGVPP YVVFSDATLQ 661 EMAQEQPTSR MAMLAVSGVG MKKFETYGEV FIQAIVQHGP PRNVPAGDDE LAFGGPTARP 721 KADKPTKAPA DPAAVNDSED ATFQLHRQGL SPLQIAEQRG LAESTVKVHL ERAYTKGLAL 781 RLEEFVTDTQ LAEIAAARTQ LGGAPALRDL FDHLREKYDY FQLRLAGIRL RK //