LOCUS       AWM32301.1              1007 aa    PRT              BCT 23-MAY-2018
DEFINITION  Hymenobacter nivis SusC/RagA family protein protein.
ACCESSION   CP029145-1095
PROTEIN_ID  AWM32301.1
SOURCE      Hymenobacter nivis
  ORGANISM  Hymenobacter nivis
            Bacteria; Bacteroidota; Cytophagia; Cytophagales;
            Hymenobacteraceae; Hymenobacter.
REFERENCE   1  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Complete genome of Antarctic heterotrophic bacterium Hymenobacter
            nivis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-APR-2018) Institute of Low Temperature Science,
            Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido
            060-0819, Japan
COMMENT     Bacteria and source DNA available from DSM 101755.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. SMRT Analysis v2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/26/2018 12:58:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,451
            CDS (total)                       :: 4,396
            Genes (coding)                    :: 4,252
            CDS (coding)                      :: 4,252
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 51 of 144
            Pseudo Genes (incomplete)         :: 71 of 144
            Pseudo Genes (internal stop)      :: 48 of 144
            Pseudo Genes (multiple problems)  :: 24 of 144
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Hymenobacter nivis"
                     /mol_type="genomic DNA"
                     /strain="NBRC 111535"
                     /isolation_source="Red snow"
                     /culture_collection="DSM:101755"
                     /culture_collection="NBRC:111535"
                     /type_material="type strain of Hymenobacter nivis"
                     /db_xref="taxon:1850093"
                     /country="Antarctica: Yatude Valley"
                     /collection_date="2006"
     protein         /locus_tag="DDQ68_05530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019949428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MKQHYLAKLW VLLLITLLGF SANAQAQTGS VSGRVLDEKN AGIPGATVLV AGTSLGVSSD
       61 ADGNFRLANI PAGPQTIVLT FVGYNEVRRP VTIVSGQNVA VNAALTVNAT ELGEAVVIGY
      121 GTQRKQDVTG AITTVTAKDF VQGQITNPEQ LIQGKVAGVQ ITTDGGAPGA STTIRIRGGS
      181 SLNASNDPLI VIDGVPVDNS SVSGAANPLS LINPNDIETY TVLKDASATA IYGSRASNGV
      241 ILITTKKGAL GDKLTVNLVS NTSLAARYNS VPVLTADEFR ATVQAVAPQQ VGLLGTGNTD
      301 WQKQVFRTAM TYDNNVSLTG AVGKLPFRAS IGNLEQQGIL ITNRLIRNSG SLSLSPILLD
      361 NHLRVNVNVK GTWVDNNFAD AGAIGSALAF DPTQNVFSDN ATYGNYFQYL QGNGTPQQNV
      421 PTNPVATLML QRNRSTVKRS IGNIQLDYKL HFLPDLHANL NLGYDVTRAT GNNLVDARSA
      481 GSYFNNPLDP TNTTARGGSY NYYSQQRNNK LLEAYLNYTK QFNENTRLEV LAGYSYQDFV
      541 TTAPAYDTYL GDASTVRTLA AKNPFRTQYT IISYYGRANL SIKDRYLFTA TLRNDNTSRF
      601 GPDYRKAYFP AGSFAWRIKE EDFLKDSKTF SDLKLRVGYG ITGQQDVVAA AGSDYPYIQR
      661 FQQNVPSAQY QLGGVYYTPY SPLGYNGKIK WEQTSTYNAG LDFGFLDNRL TLSADAYYRK
      721 TTDLLAVIPI PSLVNFTNRL ISNVGSLENK GIELNLNGNV IQSEKLNWSV NANATYNVNR
      781 ILSLGPQAAN FQGIENTGIS GGTGTNIGNY RVGSPSSAFY VYQQVYGANG KPVDGVYVDT
      841 NGDGKVDSND RRIFQQSAPK VLLGFGSNLS YNRVSLAFSL RANLGNYVYN NVNSNLGNYQ
      901 GIVGSTNFVS NVTRDANNTG FLNRTQDRYS SDYYIQNASF LRMDNVTLGY NAGKVLNGKG
      961 SLRLSAAVQN VFVATKYTGL DPEIPNGVDN NVYPRPRTYT FGLNLSI
//