LOCUS AWM32301.1 1007 aa PRT BCT 23-MAY-2018 DEFINITION Hymenobacter nivis SusC/RagA family protein protein. ACCESSION CP029145-1095 PROTEIN_ID AWM32301.1 SOURCE Hymenobacter nivis ORGANISM Hymenobacter nivis Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter. REFERENCE 1 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Complete genome of Antarctic heterotrophic bacterium Hymenobacter nivis JOURNAL Unpublished REFERENCE 2 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido 060-0819, Japan COMMENT Bacteria and source DNA available from DSM 101755. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. SMRT Analysis v2.3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/26/2018 12:58:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,451 CDS (total) :: 4,396 Genes (coding) :: 4,252 CDS (coding) :: 4,252 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 3 Pseudo Genes (total) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 51 of 144 Pseudo Genes (incomplete) :: 71 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 24 of 144 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Hymenobacter nivis" /mol_type="genomic DNA" /strain="NBRC 111535" /isolation_source="Red snow" /culture_collection="DSM:101755" /culture_collection="NBRC:111535" /type_material="type strain of Hymenobacter nivis" /db_xref="taxon:1850093" /country="Antarctica: Yatude Valley" /collection_date="2006" protein /locus_tag="DDQ68_05530" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_019949428.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MKQHYLAKLW VLLLITLLGF SANAQAQTGS VSGRVLDEKN AGIPGATVLV AGTSLGVSSD 61 ADGNFRLANI PAGPQTIVLT FVGYNEVRRP VTIVSGQNVA VNAALTVNAT ELGEAVVIGY 121 GTQRKQDVTG AITTVTAKDF VQGQITNPEQ LIQGKVAGVQ ITTDGGAPGA STTIRIRGGS 181 SLNASNDPLI VIDGVPVDNS SVSGAANPLS LINPNDIETY TVLKDASATA IYGSRASNGV 241 ILITTKKGAL GDKLTVNLVS NTSLAARYNS VPVLTADEFR ATVQAVAPQQ VGLLGTGNTD 301 WQKQVFRTAM TYDNNVSLTG AVGKLPFRAS IGNLEQQGIL ITNRLIRNSG SLSLSPILLD 361 NHLRVNVNVK GTWVDNNFAD AGAIGSALAF DPTQNVFSDN ATYGNYFQYL QGNGTPQQNV 421 PTNPVATLML QRNRSTVKRS IGNIQLDYKL HFLPDLHANL NLGYDVTRAT GNNLVDARSA 481 GSYFNNPLDP TNTTARGGSY NYYSQQRNNK LLEAYLNYTK QFNENTRLEV LAGYSYQDFV 541 TTAPAYDTYL GDASTVRTLA AKNPFRTQYT IISYYGRANL SIKDRYLFTA TLRNDNTSRF 601 GPDYRKAYFP AGSFAWRIKE EDFLKDSKTF SDLKLRVGYG ITGQQDVVAA AGSDYPYIQR 661 FQQNVPSAQY QLGGVYYTPY SPLGYNGKIK WEQTSTYNAG LDFGFLDNRL TLSADAYYRK 721 TTDLLAVIPI PSLVNFTNRL ISNVGSLENK GIELNLNGNV IQSEKLNWSV NANATYNVNR 781 ILSLGPQAAN FQGIENTGIS GGTGTNIGNY RVGSPSSAFY VYQQVYGANG KPVDGVYVDT 841 NGDGKVDSND RRIFQQSAPK VLLGFGSNLS YNRVSLAFSL RANLGNYVYN NVNSNLGNYQ 901 GIVGSTNFVS NVTRDANNTG FLNRTQDRYS SDYYIQNASF LRMDNVTLGY NAGKVLNGKG 961 SLRLSAAVQN VFVATKYTGL DPEIPNGVDN NVYPRPRTYT FGLNLSI //