LOCUS AWM32113.1 2082 aa PRT BCT 23-MAY-2018 DEFINITION Hymenobacter nivis hypothetical protein protein. ACCESSION CP029145-885 PROTEIN_ID AWM32113.1 SOURCE Hymenobacter nivis ORGANISM Hymenobacter nivis Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter. REFERENCE 1 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Complete genome of Antarctic heterotrophic bacterium Hymenobacter nivis JOURNAL Unpublished REFERENCE 2 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido 060-0819, Japan COMMENT Bacteria and source DNA available from DSM 101755. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. SMRT Analysis v2.3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/26/2018 12:58:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,451 CDS (total) :: 4,396 Genes (coding) :: 4,252 CDS (coding) :: 4,252 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 3 Pseudo Genes (total) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 51 of 144 Pseudo Genes (incomplete) :: 71 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 24 of 144 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Hymenobacter nivis" /mol_type="genomic DNA" /strain="NBRC 111535" /isolation_source="Red snow" /culture_collection="DSM:101755" /culture_collection="NBRC:111535" /type_material="type strain of Hymenobacter nivis" /db_xref="taxon:1850093" /country="Antarctica: Yatude Valley" /collection_date="2006" protein /locus_tag="DDQ68_04475" /inference="COORDINATES: protein motif:HMM:PF00271.29" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MPTSTDLIDP VGAFDTIRDN FILYIQTAFR TKFQYLEDAR KDLLLQDRVM YREPWAEPLP 61 EYLSSDMQVS ELTSEDVSRA LNDEELEAFK SLIKVGLMPE VPGKRRELYA HQAEMLRRAL 121 EGERCVITSG TGSGKTESFL LPLLAQICRE LVGWTPPRAS FPEANTWWNA NSGVRDNRVV 181 QPGASHTGLC EEYQQRGNET RPAAMRALLL YPMNALVEDQ LTRLRLALDS TEVTKWLTSS 241 GSPAKGNRIT FGRYTSETPV AGELLKDGEA NLAKVSKLRE RLQNLTENEL RINDYARQEG 301 LSEEETRELL AFFPKADGAE MRSRFDMQES PPDILITNFS MLGIMLMREV DEPIFEKTKK 361 WLRGDDLEGI ADETKKEELK KRIFHLVVDE LHLYRGTAGT EVACLLRLVL DRLGLNPTHP 421 QLRILASSAS LEPEIDGAPE GKSTQFLRDF FGVVDPAQNF SIITGKTKVI EAPTPNAGSL 481 PWQPFEELAN SWNEGDPATL VAKLAAALLP GGDGKLMSAF CHWQLRERLY IACRDGAGAY 541 RAVPVASPPF PALGHKDTLT PLTVSLFGDQ DGVIPERLRQ AVRGMFIARG LLGDVDLPRF 601 RFHYFFRNIE GLWAGLQQAD ALHKNSLAVL LPQPELRTHD NQHVLELLYC EKCGTTFLGG 661 SRLRLPNGQG FQMLSVSPEI EGIPEKGADT TVERRSYRDY AVFWLEAGQR YTPHERVRSE 721 SWGSTIPWWR QPKNESNDGQ GWQNKSEWHD ACLNSRSGLV VEGRHNENKP DWIPGRIFKV 781 KADGTPITPE LESQLRGLPG VCPGCGANHV PYGNNDSFSG RMSPVRGFRT GFAQTSQTYA 841 KELLLQLVPD EKRRKLVVFS DSREDAARVA DGIEKTHFSD LTREVLADYL MRELPALGLL 901 HEALFKKLDK EGYAQLATLY PKSASLLNKL TELDDDDLLE MQKQSPELAA AYLYMANIID 961 DSQSKVPGDK RRLAREEIEH VQRKLTPIAA LISGLEKSGK GFLLRGLLQL GVNPGGYKLD 1021 NQRAQSNAGG ESVPWYQAVN FDNEVPYLRD DYTNQEALLA KGLERTVGEL LFKRLFYSLE 1081 ASGLGLAIPP LNQLSPLANK LKGTTLEDRE IEVAAAFIRV LGDSYMYTPG EYEKPDSISG 1141 WNELPSKVRR YLKKVAEVHG LNEDELGRAL FAALRPDNQN QADNRNILDS RAHVVIRRLW 1201 LQGMGSSSPA WICANCQRPH LHLAANVCTN CRKPLSDNQK SNCAALWSRN YLAYHAAVEH 1261 RAPIRLHCEE LTGQTDNQFE RQRHFRNVVL PDEGPGKVRR IDLLSVTTTL EVGVDIGSLQ 1321 AVMMANMPPQ RFNYQQRVGR AGRRGQAYAV TLTFCRGRSH DEFYFSHPER ITGDPPPIPF 1381 LAMDQDRIVR RVLVKALLQA AFQELNITGN NMLGSFGGLG EWSNNWFHAK AWLQGADGQR 1441 LASRLLEQLV PGAAPAAVAR RAHMLAWMLD NGLEGMDAKV NGTATSVTVP GVDPAEKLAR 1501 GGVLPMFGMP SDVRNLHLDV RRANGNERHW EFPCIDRSLD MAIYEFAPGA QKLKDKTVQL 1561 AVGFTAPLME KREGRFYNPS IAPDPLDTSQ PGKPFELDMW MSNCTVCLHC KTYKVKPAPD 1621 PVSLEIVCPQ CGVTLSEDGD GNKPPTLFRI CTPAAFRTAY TGGRDERSQT QAFFTRPPLV 1681 AERSTVAPTS DVLGRMWAEL ADSDAAWRLN RGPREQLFRG RLYDNVRNDF PSRPNTSQFL 1741 NSPQQWLAEP AELWTDRDEW QRGYEISARP APTADTPLEK LALAAHKTTE ILRLRPNELP 1801 GSLSLDPNPL RSPLADGVKA AYYTAAFLLQ RVIADKLDVD PVEIEVAGLS SVALPDDIFG 1861 RQVGELILCD SLPNGSGFVA ELYNLLLKDD ANNLLRQVLY KRELKPDESI CYTDVFLLDG 1921 HRTTCADACY DCLKGYRNMS YHALLDWRLG LGLLRVMFEK KHHSGADGFF DAPEIADWLV 1981 HAHGLRDLFC NTFDQMEPIT IQPVVGPGLP GVKVDGSEIL LIVHPFWNVL DNKEDGWLAD 2041 IVVEAKVMAA LTGGSAHFID TFNLHRRQGR CYEWLLNGKC SL //