LOCUS       AWM32113.1              2082 aa    PRT              BCT 23-MAY-2018
DEFINITION  Hymenobacter nivis hypothetical protein protein.
ACCESSION   CP029145-885
PROTEIN_ID  AWM32113.1
SOURCE      Hymenobacter nivis
  ORGANISM  Hymenobacter nivis
            Bacteria; Bacteroidota; Cytophagia; Cytophagales;
            Hymenobacteraceae; Hymenobacter.
REFERENCE   1  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Complete genome of Antarctic heterotrophic bacterium Hymenobacter
            nivis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-APR-2018) Institute of Low Temperature Science,
            Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido
            060-0819, Japan
COMMENT     Bacteria and source DNA available from DSM 101755.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. SMRT Analysis v2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/26/2018 12:58:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,451
            CDS (total)                       :: 4,396
            Genes (coding)                    :: 4,252
            CDS (coding)                      :: 4,252
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 51 of 144
            Pseudo Genes (incomplete)         :: 71 of 144
            Pseudo Genes (internal stop)      :: 48 of 144
            Pseudo Genes (multiple problems)  :: 24 of 144
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Hymenobacter nivis"
                     /mol_type="genomic DNA"
                     /strain="NBRC 111535"
                     /isolation_source="Red snow"
                     /culture_collection="DSM:101755"
                     /culture_collection="NBRC:111535"
                     /type_material="type strain of Hymenobacter nivis"
                     /db_xref="taxon:1850093"
                     /country="Antarctica: Yatude Valley"
                     /collection_date="2006"
     protein         /locus_tag="DDQ68_04475"
                     /inference="COORDINATES: protein motif:HMM:PF00271.29"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MPTSTDLIDP VGAFDTIRDN FILYIQTAFR TKFQYLEDAR KDLLLQDRVM YREPWAEPLP
       61 EYLSSDMQVS ELTSEDVSRA LNDEELEAFK SLIKVGLMPE VPGKRRELYA HQAEMLRRAL
      121 EGERCVITSG TGSGKTESFL LPLLAQICRE LVGWTPPRAS FPEANTWWNA NSGVRDNRVV
      181 QPGASHTGLC EEYQQRGNET RPAAMRALLL YPMNALVEDQ LTRLRLALDS TEVTKWLTSS
      241 GSPAKGNRIT FGRYTSETPV AGELLKDGEA NLAKVSKLRE RLQNLTENEL RINDYARQEG
      301 LSEEETRELL AFFPKADGAE MRSRFDMQES PPDILITNFS MLGIMLMREV DEPIFEKTKK
      361 WLRGDDLEGI ADETKKEELK KRIFHLVVDE LHLYRGTAGT EVACLLRLVL DRLGLNPTHP
      421 QLRILASSAS LEPEIDGAPE GKSTQFLRDF FGVVDPAQNF SIITGKTKVI EAPTPNAGSL
      481 PWQPFEELAN SWNEGDPATL VAKLAAALLP GGDGKLMSAF CHWQLRERLY IACRDGAGAY
      541 RAVPVASPPF PALGHKDTLT PLTVSLFGDQ DGVIPERLRQ AVRGMFIARG LLGDVDLPRF
      601 RFHYFFRNIE GLWAGLQQAD ALHKNSLAVL LPQPELRTHD NQHVLELLYC EKCGTTFLGG
      661 SRLRLPNGQG FQMLSVSPEI EGIPEKGADT TVERRSYRDY AVFWLEAGQR YTPHERVRSE
      721 SWGSTIPWWR QPKNESNDGQ GWQNKSEWHD ACLNSRSGLV VEGRHNENKP DWIPGRIFKV
      781 KADGTPITPE LESQLRGLPG VCPGCGANHV PYGNNDSFSG RMSPVRGFRT GFAQTSQTYA
      841 KELLLQLVPD EKRRKLVVFS DSREDAARVA DGIEKTHFSD LTREVLADYL MRELPALGLL
      901 HEALFKKLDK EGYAQLATLY PKSASLLNKL TELDDDDLLE MQKQSPELAA AYLYMANIID
      961 DSQSKVPGDK RRLAREEIEH VQRKLTPIAA LISGLEKSGK GFLLRGLLQL GVNPGGYKLD
     1021 NQRAQSNAGG ESVPWYQAVN FDNEVPYLRD DYTNQEALLA KGLERTVGEL LFKRLFYSLE
     1081 ASGLGLAIPP LNQLSPLANK LKGTTLEDRE IEVAAAFIRV LGDSYMYTPG EYEKPDSISG
     1141 WNELPSKVRR YLKKVAEVHG LNEDELGRAL FAALRPDNQN QADNRNILDS RAHVVIRRLW
     1201 LQGMGSSSPA WICANCQRPH LHLAANVCTN CRKPLSDNQK SNCAALWSRN YLAYHAAVEH
     1261 RAPIRLHCEE LTGQTDNQFE RQRHFRNVVL PDEGPGKVRR IDLLSVTTTL EVGVDIGSLQ
     1321 AVMMANMPPQ RFNYQQRVGR AGRRGQAYAV TLTFCRGRSH DEFYFSHPER ITGDPPPIPF
     1381 LAMDQDRIVR RVLVKALLQA AFQELNITGN NMLGSFGGLG EWSNNWFHAK AWLQGADGQR
     1441 LASRLLEQLV PGAAPAAVAR RAHMLAWMLD NGLEGMDAKV NGTATSVTVP GVDPAEKLAR
     1501 GGVLPMFGMP SDVRNLHLDV RRANGNERHW EFPCIDRSLD MAIYEFAPGA QKLKDKTVQL
     1561 AVGFTAPLME KREGRFYNPS IAPDPLDTSQ PGKPFELDMW MSNCTVCLHC KTYKVKPAPD
     1621 PVSLEIVCPQ CGVTLSEDGD GNKPPTLFRI CTPAAFRTAY TGGRDERSQT QAFFTRPPLV
     1681 AERSTVAPTS DVLGRMWAEL ADSDAAWRLN RGPREQLFRG RLYDNVRNDF PSRPNTSQFL
     1741 NSPQQWLAEP AELWTDRDEW QRGYEISARP APTADTPLEK LALAAHKTTE ILRLRPNELP
     1801 GSLSLDPNPL RSPLADGVKA AYYTAAFLLQ RVIADKLDVD PVEIEVAGLS SVALPDDIFG
     1861 RQVGELILCD SLPNGSGFVA ELYNLLLKDD ANNLLRQVLY KRELKPDESI CYTDVFLLDG
     1921 HRTTCADACY DCLKGYRNMS YHALLDWRLG LGLLRVMFEK KHHSGADGFF DAPEIADWLV
     1981 HAHGLRDLFC NTFDQMEPIT IQPVVGPGLP GVKVDGSEIL LIVHPFWNVL DNKEDGWLAD
     2041 IVVEAKVMAA LTGGSAHFID TFNLHRRQGR CYEWLLNGKC SL
//