LOCUS AWM31633.1 774 aa PRT BCT 23-MAY-2018 DEFINITION Hymenobacter nivis TonB-dependent receptor protein. ACCESSION CP029145-355 PROTEIN_ID AWM31633.1 SOURCE Hymenobacter nivis ORGANISM Hymenobacter nivis Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter. REFERENCE 1 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Complete genome of Antarctic heterotrophic bacterium Hymenobacter nivis JOURNAL Unpublished REFERENCE 2 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido 060-0819, Japan COMMENT Bacteria and source DNA available from DSM 101755. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. SMRT Analysis v2.3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/26/2018 12:58:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,451 CDS (total) :: 4,396 Genes (coding) :: 4,252 CDS (coding) :: 4,252 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 3 Pseudo Genes (total) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 51 of 144 Pseudo Genes (incomplete) :: 71 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 24 of 144 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Hymenobacter nivis" /mol_type="genomic DNA" /strain="NBRC 111535" /isolation_source="Red snow" /culture_collection="DSM:101755" /culture_collection="NBRC:111535" /type_material="type strain of Hymenobacter nivis" /db_xref="taxon:1850093" /country="Antarctica: Yatude Valley" /collection_date="2006" protein /locus_tag="DDQ68_01800" /inference="COORDINATES: protein motif:HMM:PF07715.13" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MFFYYLQNFW AARRSTALLC AILLWAGTAQ AQRPAALRGT VTDSLSGQPL AGASVGLVGQ 61 PGSTATDALG QFRLANLPAG PYSLRVGALG YRAASQPVTL VAGEVRGVEV ALATASLNLA 121 EVTVSQPRDP NQSLAAITHI DQTLRPINSG QDLLRLVPGL FIAQHAGGGK AEQIFLRGFD 181 ADHGTDFAIS VDGMPVNMVS QGHGQGYADF HFVIPETVEQ LKVYKGPYTA RFGDFATAGA 241 GEFFTKTGLD HNQVKVEAGS YNTYRALVML DLLGTHHLLS KKTESAYVAS EYYYSASPFV 301 NNQRFKRFNG MGKYTGQLTD KTSLTLFGSY FTSNWNASGE IPSRAVADGT ITRFGSIDPS 361 EGGNTNRANA YAILTTALPH DAVLRQQVYY TRYNFSLFSN FTFFKNNPVG GDEINHTDTG 421 RNLYGYTGTY ERDNRLGSRN LHTTLGVGTR LDESALGLRH ATKRVITDTV DVGRLHEQNL 481 NAYLDATLEL TDRLSMNAAV RTDLFVFDFR GQIADSTGAF GPLSGRVNAA RVSPKLNFYY 541 QASPAVQLFL RSGMGFHSND VRAVVRGTRP AQALPRATGA EVGSTFKPVS DLVVNTAFWY 601 LHLQDELVYG GDEGTTVSVG ATQRFGFDLS ARYQLTRRLF LDFDGNYSHA RLLGAPEGKN 661 YLPLGPVFTS IAGLTYRQAN GLSASLRYRY LGGRPANEDN TVRALPYFVV DAVLVYTRPR 721 YQFGLTVQNL LNVEWNEAQY ATETQLRGES APVTERTFTP GTPFNLRANA SIFF //