LOCUS AWM31521.1 817 aa PRT BCT 23-MAY-2018 DEFINITION Hymenobacter nivis glycoside hydrolase family 92 protein protein. ACCESSION CP029145-233 PROTEIN_ID AWM31521.1 SOURCE Hymenobacter nivis ORGANISM Hymenobacter nivis Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter. REFERENCE 1 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Complete genome of Antarctic heterotrophic bacterium Hymenobacter nivis JOURNAL Unpublished REFERENCE 2 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido 060-0819, Japan COMMENT Bacteria and source DNA available from DSM 101755. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. SMRT Analysis v2.3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/26/2018 12:58:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,451 CDS (total) :: 4,396 Genes (coding) :: 4,252 CDS (coding) :: 4,252 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 3 Pseudo Genes (total) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 51 of 144 Pseudo Genes (incomplete) :: 71 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 24 of 144 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Hymenobacter nivis" /mol_type="genomic DNA" /strain="NBRC 111535" /isolation_source="Red snow" /culture_collection="DSM:101755" /culture_collection="NBRC:111535" /type_material="type strain of Hymenobacter nivis" /db_xref="taxon:1850093" /country="Antarctica: Yatude Valley" /collection_date="2006" protein /locus_tag="DDQ68_01185" /inference="COORDINATES: protein motif:HMM:TIGR01180" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MTTPACAYPT QSIGHQYYTA KMMLACLLAL LLLPRLASAQ ARRKGPATKA TKAVTKQPVD 61 YVNVFTGTSN SRWALFPGPT VPFGMVKLSP DNQGQVWTAG YEYTVSSISG FSHLHAFGLS 121 GLSVMPATGH LENLNQTKTY PGEPDGPFGT MWTAGYRSRF DKRTEHAAPG YYGVKLTDAR 181 TKAELTATTR TGWLRFTFPE TGNRQGDENS SGPARILFDF DFPTEEQVAI QKVQVRQVSP 241 TELEGSIQQK SSYPDQYTVY FVTQLSKAAD SLSSWQTPPY TGTATTYGTA FRNPATIRNN 301 IKEFEGKNDC GVWLSFHTKA GEQVVMKSGI SFVSVAQARL NLETETKPYG FNFDAVAAAG 361 RREWSELLGR VEVTGWSEAH KETFYTNLYR AYTGRAIMSD VNGQYTDACE KTQQLSAPAD 421 ATYSSDSFWG TQWNLTPLMT LLTPAKANSW VNSFLALYDS GGWIPDAPVG LEYSAVMGAQ 481 HHKSLIVSSY QKGIRGFDVN KAWAATKHDL TTPGQAGPCG GYVGNRQLGP YLQYGYVPDE 541 DGASSNTLEY AYDDYVASQF AQALGKTDDQ AYFAKRALSY KNQFDPQTGY MRRRKRDGSW 601 VSPVNIHKFG TVGDWNSSGW MEGTAWIYSF FVPQDVPELV RMVGQKRFNQ RLEEGFARGY 661 VDLSNQPNMQ APFLFNYSGK PWLTQKYSRY VMSKFYNTSP LSGWVGEEDE GQLSSLYVLF 721 AMGLFEMDGG TAVRPTYDLS SPLFNRIVLH LDKKYYGGRT FIIEAKDNSE TNIYIQSATL 781 NGQLLARPLL AHADLVKGGT LVLQMGPQPN MGWGLGQ //