LOCUS AWM31459.1 1532 aa PRT BCT 23-MAY-2018 DEFINITION Hymenobacter nivis CusA/CzcA family heavy metal efflux RND transporter protein. ACCESSION CP029145-163 PROTEIN_ID AWM31459.1 SOURCE Hymenobacter nivis ORGANISM Hymenobacter nivis Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter. REFERENCE 1 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Complete genome of Antarctic heterotrophic bacterium Hymenobacter nivis JOURNAL Unpublished REFERENCE 2 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido 060-0819, Japan COMMENT Bacteria and source DNA available from DSM 101755. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. SMRT Analysis v2.3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/26/2018 12:58:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,451 CDS (total) :: 4,396 Genes (coding) :: 4,252 CDS (coding) :: 4,252 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 3 Pseudo Genes (total) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 51 of 144 Pseudo Genes (incomplete) :: 71 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 24 of 144 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Hymenobacter nivis" /mol_type="genomic DNA" /strain="NBRC 111535" /isolation_source="Red snow" /culture_collection="DSM:101755" /culture_collection="NBRC:111535" /type_material="type strain of Hymenobacter nivis" /db_xref="taxon:1850093" /country="Antarctica: Yatude Valley" /collection_date="2006" protein /locus_tag="DDQ68_00835" /inference="COORDINATES: protein motif:HMM:PF02321.16" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_019947939.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MWRGLGESAH WLFNAQARWG RAAGGSAGAL FLFFMLEKII AASVRNKLLV ALMVLALIAW 61 GGFSAVNIPL DAIPDVTNNQ VQVITQSDAL AAQEVEQLIT VPLELQLRTV PGVTEIRSIS 121 RFGLSVITVV FPDEMTTYQT RQLVAEKLKA AEADLAAGAG KPSMAPITTG LGEIYQYSIR 181 VLPGYEKQFD LAKLRDVQDW IVKRQLAGTT GVVDVSSFGG YLRQYEVAVD PVRLASNGVT 241 MAELYVALQD NNANTGGAYI ERGPNAYFIR GEGRVSSLDD VGATVIKQAA AGAPLLVRDV 301 ATLRMGHAVR YGAMTRNGRG ETVGGVVLML KGASSEQTIK NVKTRVAEIQ KTLPKGLVIT 361 PFLDRTKLID KAIATVEHNL IEGGVIVLVV LLLLLGNWRA GVVVATMIPL CMLFALGMMS 421 LFGVSANLMS LGALDFGLIV DGAVIIVEAV IFHLVHQREQ AAHETMDDMT EVAATRLMSS 481 ALFGQLIILI VYFPILSLTG IEGKMFRPMA LTVSFAIIGA MLLCLTYVPA VTAWALKKDI 541 KEEGTVSYRI MKFLHRGYDP VIRWALGARF VVVGVAVLLL VGAGFIFSRM GGEFIPQLDE 601 GDIALNVTLA PGSSLSQTIA TNTHVQKILK AKFPEIEQIV GKSGTSEIPT DPMSLEDSDE 661 MVILKDHSQW TSASTREELA NKMQAALAGV PGVTMEFQQP IQMRFNELIS GVKSDVSIKI 721 YGDDLGVLYD KANEAAALIR SLAGVGDLKV EQIAALPQMR VTYNRQKLAQ YGVKVSDLNT 781 ILRASFAGNV AGQVYEGERR YDLVMRLDST HRQGLANLKD LYVDTPGGQK IPLDELATVA 841 YRNAPIQISR DNARRRINIG INVRGRDVQS LVQEIQGKLG QGLKLPPGYT ITYGGQFENL 901 NHAIERLKVA VPVSLLLIFL LLYLSFRSVK QALLIFTGVP LATIGGIAAL WLRGMPFSIS 961 AGVGFIALFG VAVLNGIVLL ASLNELAAEG VASVRDRILR ATEERFRPVI LTASVASLGF 1021 LPMALSTSAG AEVQKPLATV VIGGLISATL LTLVVLPVLY GLFTKDGDPN PRDAAKAKED 1081 AKHAAEKGEE PNQGPDGQPG PDGQGTNQDP EPAKKPAVAV ATALLLLALL GALGLPARAQ 1141 NTLGSTAGQP LNLGGALQAA GAQNQSLQTA GLQIQQQRAL VRTGLEAPRT IVDFQLGQIS 1201 GPLKDHTFNV IQQVAFPGVY IAQRKLLQGQ SVTAEQQARL SRRGLEQAIR SSYYGLLVGY 1261 RRVALLRRQD SLYRRAAHAA LIRYKVGETN RLEQVAAEAR ARELENRLLT ALSDLEVQRA 1321 QLGQLLGSPD PAAIDTTDAL VAPLAATDTA ALSPESNPTL GLLRQQVAVS QQQTRVDQLR 1381 RLPDVRAGYF QQTIRPEYQA LSVVQLGLAI PLIGGAGRAR VAAARLGEQV AAGQLSYATS 1441 QLGTQLRGLR LQLRRARASL DYYERTALPQ ARLILSTAEK SFRAGDIDYV TYVVNTDPAW 1501 QIQTNYLDQA QRYNELVVSV QALTGTDTPA AK //