LOCUS       AWM31459.1              1532 aa    PRT              BCT 23-MAY-2018
DEFINITION  Hymenobacter nivis CusA/CzcA family heavy metal efflux
            RND transporter protein.
ACCESSION   CP029145-163
PROTEIN_ID  AWM31459.1
SOURCE      Hymenobacter nivis
  ORGANISM  Hymenobacter nivis
            Bacteria; Bacteroidota; Cytophagia; Cytophagales;
            Hymenobacteraceae; Hymenobacter.
REFERENCE   1  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Complete genome of Antarctic heterotrophic bacterium Hymenobacter
            nivis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-APR-2018) Institute of Low Temperature Science,
            Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido
            060-0819, Japan
COMMENT     Bacteria and source DNA available from DSM 101755.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. SMRT Analysis v2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/26/2018 12:58:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,451
            CDS (total)                       :: 4,396
            Genes (coding)                    :: 4,252
            CDS (coding)                      :: 4,252
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 51 of 144
            Pseudo Genes (incomplete)         :: 71 of 144
            Pseudo Genes (internal stop)      :: 48 of 144
            Pseudo Genes (multiple problems)  :: 24 of 144
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Hymenobacter nivis"
                     /mol_type="genomic DNA"
                     /strain="NBRC 111535"
                     /isolation_source="Red snow"
                     /culture_collection="DSM:101755"
                     /culture_collection="NBRC:111535"
                     /type_material="type strain of Hymenobacter nivis"
                     /db_xref="taxon:1850093"
                     /country="Antarctica: Yatude Valley"
                     /collection_date="2006"
     protein         /locus_tag="DDQ68_00835"
                     /inference="COORDINATES: protein motif:HMM:PF02321.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019947939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MWRGLGESAH WLFNAQARWG RAAGGSAGAL FLFFMLEKII AASVRNKLLV ALMVLALIAW
       61 GGFSAVNIPL DAIPDVTNNQ VQVITQSDAL AAQEVEQLIT VPLELQLRTV PGVTEIRSIS
      121 RFGLSVITVV FPDEMTTYQT RQLVAEKLKA AEADLAAGAG KPSMAPITTG LGEIYQYSIR
      181 VLPGYEKQFD LAKLRDVQDW IVKRQLAGTT GVVDVSSFGG YLRQYEVAVD PVRLASNGVT
      241 MAELYVALQD NNANTGGAYI ERGPNAYFIR GEGRVSSLDD VGATVIKQAA AGAPLLVRDV
      301 ATLRMGHAVR YGAMTRNGRG ETVGGVVLML KGASSEQTIK NVKTRVAEIQ KTLPKGLVIT
      361 PFLDRTKLID KAIATVEHNL IEGGVIVLVV LLLLLGNWRA GVVVATMIPL CMLFALGMMS
      421 LFGVSANLMS LGALDFGLIV DGAVIIVEAV IFHLVHQREQ AAHETMDDMT EVAATRLMSS
      481 ALFGQLIILI VYFPILSLTG IEGKMFRPMA LTVSFAIIGA MLLCLTYVPA VTAWALKKDI
      541 KEEGTVSYRI MKFLHRGYDP VIRWALGARF VVVGVAVLLL VGAGFIFSRM GGEFIPQLDE
      601 GDIALNVTLA PGSSLSQTIA TNTHVQKILK AKFPEIEQIV GKSGTSEIPT DPMSLEDSDE
      661 MVILKDHSQW TSASTREELA NKMQAALAGV PGVTMEFQQP IQMRFNELIS GVKSDVSIKI
      721 YGDDLGVLYD KANEAAALIR SLAGVGDLKV EQIAALPQMR VTYNRQKLAQ YGVKVSDLNT
      781 ILRASFAGNV AGQVYEGERR YDLVMRLDST HRQGLANLKD LYVDTPGGQK IPLDELATVA
      841 YRNAPIQISR DNARRRINIG INVRGRDVQS LVQEIQGKLG QGLKLPPGYT ITYGGQFENL
      901 NHAIERLKVA VPVSLLLIFL LLYLSFRSVK QALLIFTGVP LATIGGIAAL WLRGMPFSIS
      961 AGVGFIALFG VAVLNGIVLL ASLNELAAEG VASVRDRILR ATEERFRPVI LTASVASLGF
     1021 LPMALSTSAG AEVQKPLATV VIGGLISATL LTLVVLPVLY GLFTKDGDPN PRDAAKAKED
     1081 AKHAAEKGEE PNQGPDGQPG PDGQGTNQDP EPAKKPAVAV ATALLLLALL GALGLPARAQ
     1141 NTLGSTAGQP LNLGGALQAA GAQNQSLQTA GLQIQQQRAL VRTGLEAPRT IVDFQLGQIS
     1201 GPLKDHTFNV IQQVAFPGVY IAQRKLLQGQ SVTAEQQARL SRRGLEQAIR SSYYGLLVGY
     1261 RRVALLRRQD SLYRRAAHAA LIRYKVGETN RLEQVAAEAR ARELENRLLT ALSDLEVQRA
     1321 QLGQLLGSPD PAAIDTTDAL VAPLAATDTA ALSPESNPTL GLLRQQVAVS QQQTRVDQLR
     1381 RLPDVRAGYF QQTIRPEYQA LSVVQLGLAI PLIGGAGRAR VAAARLGEQV AAGQLSYATS
     1441 QLGTQLRGLR LQLRRARASL DYYERTALPQ ARLILSTAEK SFRAGDIDYV TYVVNTDPAW
     1501 QIQTNYLDQA QRYNELVVSV QALTGTDTPA AK
//