LOCUS AWM31398.1 461 aa PRT BCT 23-MAY-2018 DEFINITION Hymenobacter nivis hypothetical protein protein. ACCESSION CP029145-98 PROTEIN_ID AWM31398.1 SOURCE Hymenobacter nivis ORGANISM Hymenobacter nivis Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter. REFERENCE 1 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Complete genome of Antarctic heterotrophic bacterium Hymenobacter nivis JOURNAL Unpublished REFERENCE 2 (bases 1 to 5027597) AUTHORS Terashima,M. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido 060-0819, Japan COMMENT Bacteria and source DNA available from DSM 101755. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. SMRT Analysis v2.3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/26/2018 12:58:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,451 CDS (total) :: 4,396 Genes (coding) :: 4,252 CDS (coding) :: 4,252 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 3 Pseudo Genes (total) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 51 of 144 Pseudo Genes (incomplete) :: 71 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 24 of 144 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Hymenobacter nivis" /mol_type="genomic DNA" /strain="NBRC 111535" /isolation_source="Red snow" /culture_collection="DSM:101755" /culture_collection="NBRC:111535" /type_material="type strain of Hymenobacter nivis" /db_xref="taxon:1850093" /country="Antarctica: Yatude Valley" /collection_date="2006" protein /locus_tag="DDQ68_00500" /inference="COORDINATES: protein motif:HMM:PF04087.12" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MLASLWRFLR TRFLLTDDMA DPAEIQADVE AGIPFQGTNL WVLIFAILVA SVGLNVNSTA 61 VIIGAMLISP LMGPIVGIGY GAATMELDLM RRGAKSLLTA TLLSLAVSAL YFRLTPLTDA 121 GSELLGRTQP TTWDVLIALF GGAAGAVGLT RREHSNVIPG VAIATALMPP LCTAGYGLAT 181 AHWAYFGGAL YLFSINCVFI SLSTFLVIQI LPLPHHEFKT AGGARHVRNI IWGLALLTAA 241 PSVYLAVGIV RNGTFTHNAQ RFVEEQLNLP GTYVVTSRIG ATAHTVNVLL AGQQLTPAQL 301 RAARAQLPKY RLDNAQLTVR QGLAHVDSAD AQALRASVLE DVRNRNEQTL VSYEGRLVQL 361 QQQLARADSL AVPSLPSAAA LLREVQAEHP AVHQLGLSRL VRPAADSLQA DTTVVVSLRV 421 RRALPTAEQQ RLAAWLRLRG GGRQPVQLLI ATDAPARPAK R //