LOCUS ASD28011.1 674 aa PRT BCT 22-JUN-2017 DEFINITION Brevundimonas diminuta type III secretion protein protein. ACCESSION CP021995-2868 PROTEIN_ID ASD28011.1 SOURCE Brevundimonas diminuta ORGANISM Brevundimonas diminuta Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas. REFERENCE 1 (bases 1 to 3385620) AUTHORS Chang,H., Feng,Y., Li,Z., Xue,J. and Cheng,D. TITLE Biodegradation of gentamicin by bacterial consortia AMQD4 in synthetic medium and raw gentamicin sewage JOURNAL Unpublished REFERENCE 2 (bases 1 to 3385620) AUTHORS Liu,Y. TITLE Direct Submission JOURNAL Submitted (15-JUN-2017) IARRP, CAAS, ZhongGuancun, Beijing 100081, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 296.25x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 06/16/2017 13:13:51 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 3,288 CDS (total) :: 3,227 Genes (coding) :: 3,192 CDS (coding) :: 3,192 Genes (RNA) :: 61 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 35 Pseudo Genes (ambiguous residues) :: 0 of 35 Pseudo Genes (frameshifted) :: 9 of 35 Pseudo Genes (incomplete) :: 21 of 35 Pseudo Genes (internal stop) :: 8 of 35 Pseudo Genes (multiple problems) :: 3 of 35 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Brevundimonas diminuta" /mol_type="genomic DNA" /strain="BZC3" /isolation_source="gentamicin fermentation residue" /db_xref="taxon:293" /country="China: Shandong" /collection_date="2016" protein /locus_tag="CD943_14600" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_009857455.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSFASPLKLL GLRHNGGGVG RYSDLFLVAG VAAIIAMMIM PLPSLAIDAL VAINISAGVV 61 MLLVSIYIAS IVDISVFPSL LLITTLFRLA LSIATTRMIL LEGHAGAIIN TFGNMVAGGN 121 LVVGLVVFLI ITVVQFIVIA KGAERVAEVA ARFSLDAMPG KQLSIDSDLR SGLIDKDEAK 181 RRRRLLEMES KLNGNLDGAM KFVKGDAIAG IIIVVINLLG GLAVGMLQNG MDFGAAVQKY 241 SILTIGDGMV MQIPALLAAM SAGLLVTRGG DSETDAHLGA SMHRQLSAQP KVFLVAGGMC 301 WLLALVPGFP TVVFLLLGAA AMTASIMIEP RWRKSAGRKV KALTGRAAAE ADGPIASTQT 361 RPTESAAMTP LLLEIDGRAL RATDPERLTA ALETLLDEFE ASLGVALPRV TVRYGPAEAA 421 NRWRLMAFEA PLGAGDPGPA EDALDTTLAG VRGLLRRNAG MFIGIQEASI LLNRAGESYP 481 EVVKEVARAL PLARIAEIMR RLAEEEVPLR NLRDILESLA DAGQREKDPL ALTEFARVAL 541 RRQISHRYAP DGVLKAAVLE PALEKHLRES IRVGGAGQQL ALEPDMARQI IEAVQKTVRD 601 TEADAVLAAI DLRRHIRKLV EPELFDTPAL SFHELLPSLK LEIVGRVALP DLDAATPAAV 661 PAPSNPPAST AAAA //