LOCUS ASD27986.1 477 aa PRT BCT 22-JUN-2017 DEFINITION Brevundimonas diminuta dihydropyrimidine dehydrogenase protein. ACCESSION CP021995-2842 PROTEIN_ID ASD27986.1 SOURCE Brevundimonas diminuta ORGANISM Brevundimonas diminuta Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas. REFERENCE 1 (bases 1 to 3385620) AUTHORS Chang,H., Feng,Y., Li,Z., Xue,J. and Cheng,D. TITLE Biodegradation of gentamicin by bacterial consortia AMQD4 in synthetic medium and raw gentamicin sewage JOURNAL Unpublished REFERENCE 2 (bases 1 to 3385620) AUTHORS Liu,Y. TITLE Direct Submission JOURNAL Submitted (15-JUN-2017) IARRP, CAAS, ZhongGuancun, Beijing 100081, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 296.25x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 06/16/2017 13:13:51 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 3,288 CDS (total) :: 3,227 Genes (coding) :: 3,192 CDS (coding) :: 3,192 Genes (RNA) :: 61 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 35 Pseudo Genes (ambiguous residues) :: 0 of 35 Pseudo Genes (frameshifted) :: 9 of 35 Pseudo Genes (incomplete) :: 21 of 35 Pseudo Genes (internal stop) :: 8 of 35 Pseudo Genes (multiple problems) :: 3 of 35 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Brevundimonas diminuta" /mol_type="genomic DNA" /strain="BZC3" /isolation_source="gentamicin fermentation residue" /db_xref="taxon:293" /country="China: Shandong" /collection_date="2016" protein /locus_tag="CD943_14470" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_003164538.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MQKSGRSNPG GFLIEQRRLE KQPADLRVGA FTEITLKPTA AGGTAQASRC TDCGVPFCQN 61 ACPLQNNIPD WLALSADGDL REAWRVASAT STMPEICGRI CPQDRLCEGA CTLQQSGWDG 121 VTIGSVEAWI ADAAFDNGWV EPIRPLAERG QSVAIVGSGP AGLAAADRLR SEGYAVTVYD 181 RHDRAGGLLT YGIPGFKLEK RIVQRRVDRL IESGVEFVLN TNVGVDVTMV ELRARHDAVL 241 LAMGVYQART LSVPGRGPND TVAALDFLIA QNRVDCGDAA DASAPHAAGR DVVVVGGGDT 301 AMDCVRTAIR QGANSVVCLY RRDRDNMPGS AREVQNAEEE GVRFEWLGAP KALMSKGEAV 361 VAVRAQRMAL TEASAGGRRD IAPVAGSDFD LPADLVIEAL GFEPEAFAEQ LDAELGLTKW 421 NTLQVARGGF ATTLPGVFAA GDAVRGASLV VWAVRDGQDA AAEIDRYLRA CTEEAAA //